Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0332.Seq
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81530-7|CAB04311.2|  292|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 97  DDVSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVT 252
           +DV  IIK+ ++  +G  T Y H +  QW    VE    +L    KPYKYVVT
Sbjct: 6   EDVHMIIKQVLDEVVGASTQYTHKDSVQWNQKAVEQITKKLVAAGKPYKYVVT 58



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +3

Query: 273 GAGLHTSSSCYWXNTTDGSCTXRWXNKTMYCIVSV 377
           G+GL+ S+  YW   TD S   RW  KTM  IV V
Sbjct: 67  GSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYV 101


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 258 ILQKXGAGLHTSSSCYWXNTTDGSCTXRWXNKTMYCIVSV 377
           I ++ G G  T+  C W    DG  T R+   +++C V V
Sbjct: 78  IAEQCGNGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLV 117


>Z81530-7|CAB04311.2|  292|Caenorhabditis elegans Hypothetical
           protein F46A8.10 protein.
          Length = 292

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 175 QWTSAVVESCLGQL---TKLQKPYKYVVT*QYCRXMV 276
           Q TS ++  CL  L   T ++ P +YVV   YCR ++
Sbjct: 82  QTTSLMIVQCLEPLEIFTGIETPNRYVVHDMYCRPLL 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,092,296
Number of Sequences: 27780
Number of extensions: 173919
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)