Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0332.Seq
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 356 YVLHCLSLWAWHITWVYYIXLLA*NLFY 439
           Y    LS W    T +YYI +LA  LFY
Sbjct: 102 YATCVLSCW----TNIYYIIILAWALFY 125


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 356 YVLHCLSLWAWHITWVYYIXLLA*NLFY 439
           Y    LS W    T +YYI +LA  LFY
Sbjct: 155 YATCVLSCW----TNIYYIIILAWALFY 178


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +1

Query: 97  DDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKL 225
           DD+  + K        G+   HN + +   A + +CL +L  L
Sbjct: 32  DDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKVL 74


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 236 YGFCNLVNCPRHDSTT 189
           +GF  L+NC  +D  T
Sbjct: 27  FGFSYLLNCKNYDHPT 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,126
Number of Sequences: 438
Number of extensions: 2271
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)