Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0330.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    36   0.004
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    25   6.3  

>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 257 SVAPXDGAGLTEXLHARGINVRYLGRVA 340
           S  P DG  L   +H  GIN+RYLG +A
Sbjct: 704 SFLPIDGVALCRAMHRSGINIRYLGEIA 731


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 99  EFDVRFNPDVYSAGIKHAAAPEHLAKQ 179
           E+  RF+PDV++  +    A E LAK+
Sbjct: 231 EYLDRFSPDVFAKNLPFLQAVEQLAKK 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,340
Number of Sequences: 5004
Number of extensions: 9895
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)