Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0330.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 42 2e-04
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 32 0.29
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 32 0.29
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 32 0.29
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 27 8.4
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538... 27 8.4
>02_05_0528 -
29782382-29782864,29782994-29783092,29783319-29783387,
29783781-29783888,29783965-29784274,29784772-29784812,
29784886-29784942,29785290-29785448,29785587-29785655,
29785728-29785877,29785967-29786098,29786347-29786433,
29786516-29786686,29786760-29786960,29787348-29787416,
29787510-29787618,29787887-29788005,29788676-29788780,
29789377-29789755,29790022-29790150,29790223-29790402,
29791310-29791469,29791604-29791744,29791832-29792021,
29792100-29792161,29792879-29793107
Length = 1335
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 260 VAPXDGAGLTEXLHARGINVRYLGRVA 340
V+P DG LT+ LH+ GINVRYLG+VA
Sbjct: 724 VSPMDGQTLTDVLHSNGINVRYLGKVA 750
Score = 33.9 bits (74), Expect = 0.073
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +3
Query: 15 EKQENDSGEXXXXXXXXXXXXXXXLKEXEFDVRFNPDVYSAGIKHAAAPEHLAKQRHLVK 194
+K + DSG E ++ FNP+V++ K A +PE +A LVK
Sbjct: 643 DKFDEDSGPRPGTSDDSSATKPAEHNESTAEILFNPNVFTE-YKLAGSPEEIAADEALVK 701
Query: 195 EAAXFXLTTXIXXF 236
+ + L T I F
Sbjct: 702 KVGSYLLDTVIPKF 715
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 260 VAPXDGAGLTEXLHARGINVRYLGRV 337
++P DG LT+ +H RG+ +R LG+V
Sbjct: 707 LSPVDGRTLTDFMHTRGLQMRSLGQV 732
>04_04_1358 +
32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 260 VAPXDGAGLTEXLHARGINVRYLGRV 337
++P DG +T+ +H RG+N+ LGRV
Sbjct: 745 LSPVDGRTMTDFMHTRGLNMCSLGRV 770
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 260 VAPXDGAGLTEXLHARGINVRYLGRV 337
++P DG LT+ +H RG+ +R LG+V
Sbjct: 709 LSPVDGRTLTDFMHTRGLQMRSLGQV 734
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 330 PRYRTLMPRACXXSVSPAPSIGATLSPRTPARXPXSA 220
P YR+L+ S+ PS+ T P TP P A
Sbjct: 146 PNYRSLITDV-QPSIQAVPSVAPTTQPTTPTSTPLPA 181
>02_02_0431 -
10152228-10152352,10152688-10152919,10153602-10153808,
10153915-10154034,10154114-10154260,10155080-10155147,
10155502-10155667,10156765-10156914,10157219-10157335,
10158177-10158281,10159050-10159147,10159594-10159763,
10161489-10161511,10161927-10162006,10162191-10162259,
10163198-10163442,10163614-10163810
Length = 772
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 348 RASATRPRYRTLMPRACXXSVSPAPSIGATLSPRTP 241
R A R R L PRA S SP+ ++ A + TP
Sbjct: 20 RRCAPRRHRRALAPRAASSSPSPSTAVAAPVYAPTP 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,856,587
Number of Sequences: 37544
Number of extensions: 104436
Number of successful extensions: 332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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