Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0330.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    45   3e-05
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    33   0.14 
At4g28080.1 68417.m04027 expressed protein                             31   0.33 
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    31   0.57 
At2g14860.1 68415.m01689 peroxisomal membrane protein 22 kDa, pu...    29   2.3  
At4g32610.1 68417.m04643 mitochondrial glycoprotein family prote...    28   3.0  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    27   5.3  
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    27   5.3  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    27   5.3  
At5g18250.1 68418.m02145 expressed protein similar to unknown pr...    27   7.0  
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill...    27   7.0  

>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +2

Query: 260 VAPXDGAGLTEXLHARGINVRYLGRVA 340
           V+P DG  LTE LHA G+NVRY+GRVA
Sbjct: 814 VSPMDGQTLTEALHAHGVNVRYIGRVA 840



 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 451 EPMXIGSAVAHFLNC 495
           E   IGSAV+HFLNC
Sbjct: 874 EDHDIGSAVSHFLNC 888


>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
           protein ESTs gb|F20110 and gb|F20109 come from this
           gene; contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 260 VAPXDGAGLTEXLHARGINVRYLGRVA 340
           ++P DG  LT+ +H RG+ +R LG VA
Sbjct: 690 LSPVDGRTLTDFMHIRGLQMRSLGHVA 716


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 260 VAPXDGAGLTEXLHARGINVRYLGRV 337
           ++P DG  LT+ +H RG+ +  LGRV
Sbjct: 565 LSPVDGRTLTDFMHTRGLQMHSLGRV 590


>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P46825 Kinesin light chain
           (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
           TPR Domain
          Length = 1797

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 260 VAPXDGAGLTEXLHARGINVRYLGRV 337
           ++P DG  LT+ +H RG+ +R LG V
Sbjct: 698 LSPVDGRTLTDFMHTRGLRMRSLGYV 723


>At2g14860.1 68415.m01689 peroxisomal membrane protein 22 kDa,
           putative similar to 22 kDa peroxisomal membrane protein
           {Mus musculus} SWISS-PROT:P42925, NCBI_gi:454833
          Length = 252

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 327 RYRTLMPRACXXSVSPAPSIGATLSPRTPARXPXSAW*AG 208
           R R L+ RA    VSP+PS+G + S  +P+R     W  G
Sbjct: 41  RSRQLLERAKETGVSPSPSLGFS-SSSSPSRIGFVGWYLG 79


>At4g32610.1 68417.m04643 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SP|P40513
           Mitochondrial acidic protein MAM33, mitochondrial
           precursor {Saccharomyces cerevisiae}; contains Pfam
           profile PF02330: Mitochondrial glycoprotein
          Length = 557

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +3

Query: 12  GEKQENDSGEXXXXXXXXXXXXXXXLKEXEFDVRFNPDVYSAGIKHAAAPEHLAKQRHLV 191
           GEK+EN +GE               LKE + +V+ N D  S   +   +   +  +  L 
Sbjct: 207 GEKKENTTGESKASKKKKKKDKQKELKESQSEVKSNSDAASESAEQEESSSSIDVKERLK 266

Query: 192 KEAA 203
           K A+
Sbjct: 267 KIAS 270


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 360 GCAARASATRPRYRTLMPRACXXSVSPAPSIGATLSPRTPARXP 229
           G +   S +R R R+  P+A     SPA S   +  PR+ +R P
Sbjct: 219 GRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSP 262


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 360 GCAARASATRPRYRTLMPRACXXSVSPAPSIGATLSPRTPARXP 229
           G +   S +R R R+  P+A     SPA S   +  PR+ +R P
Sbjct: 219 GRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSP 262


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 360 GCAARASATRPRYRTLMPRACXXSVSPAPSIGATLSPRTPARXP 229
           G +   S +R R R+  P+A     SPA S   +  PR+ +R P
Sbjct: 219 GRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSP 262


>At5g18250.1 68418.m02145 expressed protein similar to unknown
          protein (dbj|BAA90342.1)
          Length = 133

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 95 LLERGHSARRRRHHCAGTLAR 33
          + + GH    R HHCAG L R
Sbjct: 1  MTDSGHDIEIRCHHCAGPLTR 21


>At1g77460.1 68414.m09020 C2 domain-containing protein /
           armadillo/beta-catenin repeat family protein similar to
           CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
           profiles PF00514: Armadillo/beta-catenin-like repeat,
           PF00168: C2 domain
          Length = 2110

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 143 DAGGVHVRVEAHV-ELRLLERGHSARRRRHHCAGTLARV 30
           DAGGVH  +EA V   +   +G   +  + H  G LA V
Sbjct: 271 DAGGVHALIEAIVAPSKECMQGKHGQSLQEHATGALANV 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,535,947
Number of Sequences: 28952
Number of extensions: 59956
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)