Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0329.Seq
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.1  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   2.8  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    27   3.7  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.7  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   4.9  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    26   4.9  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 702 ERPVHV-KDDEQLRRSATPVPTWPPQGTTRSPLKTSSSE 589
           E P HV +D  Q   SATPVP   P   +  P K   S+
Sbjct: 475 EMPPHVTRDYTQPAASATPVPKEKPSEKSEKPPKKKGSK 513


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 543 GCS-SWNLERNGSIINVRWTRFSKGCVLFLEAAML 644
           GC   + + R G+++N++W   +  C+L+L +A L
Sbjct: 189 GCLIGYFIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
 Frame = -1

Query: 141 YLAGW---GIVTYKIVLVLYLHSMTNKY---VISFPF 49
           YL+ W    I T+  VLV+Y+H + N Y   V++ PF
Sbjct: 44  YLSRWWALAIPTWLFVLVIYIHVVLNAYNTEVLTKPF 80


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 551 VLELGKKWKHNKCSLDEVFKGLRXXXXXXXXXXXXAD-LRSCSSSLTWTGLSMQQVMQFT 727
           +LE+G     NKCS   +F+  R             D L        +TG+S   V+ F 
Sbjct: 107 LLEIGSVSVDNKCSTCGLFRVSRIDLHSVHPLIKQQDFLERTPEEGLFTGISCSLVLNFA 166

Query: 728 PP 733
           PP
Sbjct: 167 PP 168


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 572 ISFQVPRRAPSARTDLWSAAP 510
           ISF VPRR+ S ++D++  AP
Sbjct: 348 ISFIVPRRSESFQSDIYPPAP 368


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 483 SPCSVLGHRNVCDVSL*NHSNALSNHRRSPDKTCTAL 373
           SP S   H  +CD     H+N +  HRR+ D    AL
Sbjct: 101 SPTSKQTHMKLCD----QHNNGIEIHRRNCDSHAEAL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,764
Number of Sequences: 5004
Number of extensions: 57935
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)