Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0329.Seq
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0615 - 22761375-22761760,22762218-22765026                       32   0.42 
02_02_0152 - 7244474-7244597,7244822-7244969,7245221-7245474,724...    30   2.2  
08_02_1127 + 24496838-24497590                                         29   3.9  
07_03_1759 + 29285262-29287208                                         29   5.2  
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937...    29   5.2  
12_02_0050 + 12892198-12892252,12892359-12892499,12893081-128932...    28   9.0  
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442...    28   9.0  

>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +3

Query: 468 TPSKETNVFNENVLRCCRPEISAGGGCSS--WNLER-NGSIINVR--WTRFSKGCVLFLE 632
           TP ++ N   +N+L C R E   G GCS   +  E  NG II V+  W + SK   +   
Sbjct: 759 TPFQKLNFCVDNILECLRDENVIGKGCSGVVYRAEMPNGEIIAVKKLW-KTSKEEPIDAF 817

Query: 633 AAMLEPESQICGAVRH 680
           AA    E QI G +RH
Sbjct: 818 AA----EIQILGHIRH 829


>02_02_0152 -
           7244474-7244597,7244822-7244969,7245221-7245474,
           7246367-7246475,7247142-7247430
          Length = 307

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 672 QLRRSATPVPTWPPQGTTRSPLKTSSSEHL 583
           Q R  +TPV  WPP  T R  L TSS   L
Sbjct: 131 QTRSPSTPVVGWPPVRTFRRNLATSSKASL 160


>08_02_1127 + 24496838-24497590
          Length = 250

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 7/26 (26%)
 Frame = +1

Query: 607 QRAACCSL------RRPC-WNRSRRS 663
           QRAACCSL      RRPC W+R  RS
Sbjct: 137 QRAACCSLAGGGGCRRPCRWSRPSRS 162


>07_03_1759 + 29285262-29287208
          Length = 648

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -1

Query: 726 VNCMTCCMERPVHVK--DDEQLRRSATPVPTWPPQGTTR 616
           V  ++ C+    H+K   D  LR    P PTW PQG  R
Sbjct: 387 VGALSDCLRDLEHLKLLYDAALRDGKLPGPTWRPQGGVR 425


>01_01_1176 -
           9372879-9373097,9373814-9374278,9374372-9375447,
           9375534-9375687,9375783-9375879,9376238-9376374
          Length = 715

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 411 LIKRYYGFKVKHHK--HYDGLTPSKETNVFNENVLR 512
           L+ +Y+  + K      +D   PSKE+N F ENVL+
Sbjct: 229 LLNKYFAERYKGRLIVRFDDTNPSKESNEFVENVLK 264


>12_02_0050 +
           12892198-12892252,12892359-12892499,12893081-12893237,
           12894056-12894128,12894506-12894514
          Length = 144

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 486 NVFNENVLRCCRPEISAGGGCSSWNLERNGSIINVRWTRFSKGC 617
           N  +  VL C + E   GGG  SW L R+   +      FS  C
Sbjct: 64  NTGHRRVLGCRKGEERRGGGEGSWFLARSLQSVGTLHVGFSSQC 107


>10_08_0106 +
           14842748-14843085,14843122-14843250,14844145-14844211,
           14847177-14847324,14847998-14848097,14848306-14848384,
           14848527-14848687,14848829-14848908,14849319-14849475,
           14849575-14849723,14849909-14850076,14850426-14850719,
           14851002-14851046,14851213-14851462,14851707-14851835,
           14852799-14853039,14853977-14854642
          Length = 1066

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 738 AKGGVNCMTCCMERPVHVKDDEQLRRSATPVPTWPPQGTTRSPLKTSSS 592
           + G  N  T  M      +  +   RSA P P  P + + RSP ++S S
Sbjct: 830 SSGANNDSTTSMRPKARSRSSQPADRSAPPPPASPDRHSRRSPHRSSGS 878


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,520,321
Number of Sequences: 37544
Number of extensions: 400516
Number of successful extensions: 1200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)