Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0329.Seq
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)                   29   5.3  
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   7.0  
SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)                     28   9.2  
SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)               28   9.2  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)
          Length = 319

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 138 LAGWGIVTYKIVLVLYLHSMTNKYVIS 58
           LAG G V Y I+    LH+ +N Y++S
Sbjct: 28  LAGNGAVAYVIIRTFRLHTASNAYILS 54


>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 921

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 744 LLAKGGVNCMTCCMERPVHVKDDEQLRRSATPVPTWPPQGTTRSPLKTSSSE 589
           L++ G V  +    +R V+ K  +    +  P  T PP  TT +PL   S++
Sbjct: 159 LVSTGNVMLVRLISDRSVNSKGFKLAYSAIAPPTTTPPPATTEAPLNCLSNQ 210


>SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 603 TSSSEHLLCFHFFPSSKT 550
           T++S+H++CF  FP SKT
Sbjct: 58  TNTSKHVMCFSDFPMSKT 75


>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1413

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +3

Query: 441 KHHKHYDGLTPSKETNVFNENVL--RCCRPEISAGGG-CSSWNLERNGSIINVRW 596
           KHHK Y  ++  K      +N    RC   +  AG      W + R+ + + V W
Sbjct: 325 KHHKKYSAMSALKRVPSIEDNFYKDRCFADQRLAGANPFQIWRVTRSSANVGVGW 379


>SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)
          Length = 442

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query: 543 GCSSWNLER----NGSIINVRWTRFSKGCVLFLEAAMLEP 650
           GC+S N +     NGS +  R   F +G V+ LEA+ L P
Sbjct: 357 GCTSINSKGLVYVNGSCMKTRLPPFKRGSVVALEASKLSP 396


>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
          Length = 693

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 693 VHVKDDEQLRRSATPVPTWPPQGTTRSPLKTSSS--EHLLCFHFFPSSKTSTLRP 535
           +HV D  Q  +  TP    PP      P  TS+   + +   H  PS++TS   P
Sbjct: 115 LHVTDQLQYAQELTPSRETPPSSQITKPTTTSTKTRQRVNKRHRGPSTRTSRATP 169


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 95   NTSTILYVTIPHPAKYHNT 151
            NTS ++ +T+ HP  Y NT
Sbjct: 1901 NTSVVVQITVTHPGSYGNT 1919


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,301,307
Number of Sequences: 59808
Number of extensions: 441538
Number of successful extensions: 1097
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)