Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0329.Seq
         (744 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34219-1|AAA65123.1|  317|Homo sapiens retinaldehyde-binding pro...    35   0.35 
J04213-1|AAA60251.1|  317|Homo sapiens RLBP1 protein.                  35   0.35 
BC004199-1|AAH04199.1|  317|Homo sapiens retinaldehyde binding p...    35   0.35 
BC126459-1|AAI26460.1|  257|Homo sapiens chromosome 10 open read...    32   2.5  
AL121928-10|CAI12523.1|  257|Homo sapiens novel protein protein.       32   2.5  
AK024342-1|BAB14892.1|  257|Homo sapiens protein ( Homo sapiens ...    32   2.5  

>L34219-1|AAA65123.1|  317|Homo sapiens retinaldehyde-binding
           protein protein.
          Length = 317

 Score = 34.7 bits (76), Expect = 0.35
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 348 NEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTP 473
           +  + +RF+R  KF    AY+L++ Y  F++++ + +D L+P
Sbjct: 92  DSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 133


>J04213-1|AAA60251.1|  317|Homo sapiens RLBP1 protein.
          Length = 317

 Score = 34.7 bits (76), Expect = 0.35
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 348 NEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTP 473
           +  + +RF+R  KF    AY+L++ Y  F++++ + +D L+P
Sbjct: 92  DSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 133


>BC004199-1|AAH04199.1|  317|Homo sapiens retinaldehyde binding
           protein 1 protein.
          Length = 317

 Score = 34.7 bits (76), Expect = 0.35
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 348 NEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTP 473
           +  + +RF+R  KF    AY+L++ Y  F++++ + +D L+P
Sbjct: 92  DSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 133


>BC126459-1|AAI26460.1|  257|Homo sapiens chromosome 10 open reading
           frame 95 protein.
          Length = 257

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 732 GGVNCMTCCMERPVHVKDDEQLRRSATPVPTWPP 631
           GG  CM     RP       + RRS +P PTWPP
Sbjct: 43  GGRPCMCTAGRRPNRASG--RRRRSCSPAPTWPP 74


>AL121928-10|CAI12523.1|  257|Homo sapiens novel protein protein.
          Length = 257

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 732 GGVNCMTCCMERPVHVKDDEQLRRSATPVPTWPP 631
           GG  CM     RP       + RRS +P PTWPP
Sbjct: 43  GGRPCMCTAGRRPNRASG--RRRRSCSPAPTWPP 74


>AK024342-1|BAB14892.1|  257|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14280 fis, clone PLACE1005584, weakly similar to
           TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0. ).
          Length = 257

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 732 GGVNCMTCCMERPVHVKDDEQLRRSATPVPTWPP 631
           GG  CM     RP       + RRS +P PTWPP
Sbjct: 43  GGRPCMCTAGRRPNRASG--RRRRSCSPAPTWPP 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,864,088
Number of Sequences: 237096
Number of extensions: 2177193
Number of successful extensions: 4595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4595
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)