Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0329.Seq
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +3

Query: 426 YGFKVKHHKHYDGLTPSKETNVFNENVLRCCRPEIS 533
           YG+ +     +  L P   T+  +++ ++  RP++S
Sbjct: 382 YGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVS 417


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 612 GCVLFLEAAMLE 647
           GC +FL AAM+E
Sbjct: 300 GCTIFLFAAMVE 311


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 455 LRWPNTEQGD*CVQRERATVLPTRDQCGRRVLVLELGKKWKHNKCSLDEVFKGL 616
           +RW +TE G    +  R T     D      L   LGK+WK N    D V K L
Sbjct: 61  IRWKDTEIGLFLHEELRRTEAFEVD------LEFYLGKEWKKNLNLRDSVTKYL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,801
Number of Sequences: 438
Number of extensions: 4310
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)