Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0329.Seq
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein ...    29   2.5  
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    29   4.3  
At3g26290.1 68416.m03280 cytochrome P450 71B26, putative (CYP71B...    27   9.9  
At2g11520.1 68415.m01242 protein kinase family protein contains ...    27   9.9  

>At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 253

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 637 AASRNNTQPFENLVQRTFIMLPFLSKFQDEHPPPALISGRQHRS-TFSLNT 488
           A     TQ F N+   +F  LPF+ + +D++P P  + G+      FS+ T
Sbjct: 4   ATGETETQDFMNV--ESFSQLPFIRRPKDKNPKPIRVFGKDFTGRDFSITT 52


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 673 TAPQICDSGSNMAASRNNTQPFENLVQRTFIMLPFLSKFQDEHPPPALISG 521
           TA  + +SG + A       P +  +    ++LP + KF +  PPPA+  G
Sbjct: 362 TAATVSESGGDGAVDEEEIDPLDAFMNT--MVLPEVEKFCNGAPPPAVNDG 410


>At3g26290.1 68416.m03280 cytochrome P450 71B26, putative (CYP71B26)
           identical to cytochrome P450 71B26 (SP:Q9LTL0)
           [Arabidopsis thaliana]; contains Pfam profile: PF00067
           cytochrome P450
          Length = 500

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 507 LRCC-RPEISAGGGCSSWNLERNGSIINVRWTRFSKGC 617
           L CC RP ++ G   S  NL+ + S  N  W    K C
Sbjct: 93  LHCCSRPSLAGGRELSYNNLDMSSSPYNEYWKELRKLC 130


>At2g11520.1 68415.m01242 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 510

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 592 AGRGFQRAACCSLRRPCWNRSRRSAELFVIFDMDGSLHAAS 714
           AG GF    CC+L  PC+++ R++    V+     S+H  S
Sbjct: 128 AGSGFL-LLCCALCCPCFHKERKANSHEVLPKESNSVHQVS 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,114
Number of Sequences: 28952
Number of extensions: 309787
Number of successful extensions: 920
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)