Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0328.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.46 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   0.61 
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   1.9  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   2.5  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    25   5.7  

>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 76  LGARATKCGAKGKEGKHAADKGKGADRPQPKEKAKPQAT 192
           +G+R    G+  K    + +K K   +P+P ++  PQAT
Sbjct: 351 IGSRIAMNGSSVKASNISTEKSKTIAKPKPAKELSPQAT 389


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 94  KCGAKGK--EGKHAADKGKGADRPQPKE 171
           KC  KGK  +GKHA  KGK    P+P++
Sbjct: 149 KCKGKGKHHKGKHAKGKGK-KSHPKPED 175


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 263 DHSRTSDESSLLRSIIC 213
           D  RTSD  S+LRS++C
Sbjct: 80  DQLRTSDFQSILRSVVC 96


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = -1

Query: 327 LCHVGRSKPHLQSYRSSPLTPGPFANLGRVVAFTVDHMCHSELFCSRLRFGL 172
           LC +    P +  Y    +T  PF NL   +            F SR R GL
Sbjct: 483 LCDIDELAPEIMEYYYDNITFTPFVNLDDELLLIEKEKNEKYNFTSRKRLGL 534


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 103 AKGKEGKHAADKGKGADRPQPKEKAKPQ 186
           AKG +GK A +K +  +  QP E+ K +
Sbjct: 77  AKGAQGKGADEKEEKKETIQPPEEVKTE 104



 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 67  TMSLGARATKCGAKGKEGKHAADKGKGADRPQPKEKAKPQATTE 198
           T S GAR      K +E   +AD  KGA      EK + + T +
Sbjct: 53  TDSTGARDANLSLKTQEPIVSADDAKGAQGKGADEKEEKKETIQ 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,043
Number of Sequences: 5004
Number of extensions: 19593
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)