Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0328.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 30 0.77
11_04_0081 - 13320073-13320639 28 3.1
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 28 3.1
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947 27 5.5
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 27 5.5
12_01_0339 + 2603351-2603891,2604048-2604226 27 7.2
04_03_1037 - 21901989-21902468,21903308-21903526,21903984-219041... 27 7.2
12_02_0422 - 18934190-18934344,18935687-18936227 26 9.5
12_01_0057 + 489788-490882,490891-492207 26 9.5
07_03_0993 - 23182070-23182615 26 9.5
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 29.9 bits (64), Expect = 0.77
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 254 RTSDESSLLRSIICAIRSCSVVACGLAFSLGC 159
RT ES++LR C +RSCS + G LGC
Sbjct: 448 RTKSESTILRG--CLLRSCSSIGKGEFDCLGC 477
>11_04_0081 - 13320073-13320639
Length = 188
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 85 RATKCGAKGKEGKHAADKGKGADRPQPKEK 174
+AT A+G G+ AA +G+G R + KE+
Sbjct: 156 QATMATARGGSGREAAARGEGGGRERGKEE 185
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 100 GAKGKEGKHAADKGKGADRPQPKEKAKPQATTEQLRMAHMID 225
G K E K DKGKG D+ + KEK + T + +D
Sbjct: 426 GVKDSEEKDK-DKGKGVDKEKSKEKDFDRKTEREKEKIRAVD 466
>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
Length = 660
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 82 ARATKCGAKGKEGKHAADKGKGADRPQPKEKAKPQATT 195
A+A AKG++ + A K D + K+KA ATT
Sbjct: 454 AKAAAAAAKGEKAEKAETDKKEKDGSEEKKKAAAAATT 491
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 100 GAKGKEGKHAADKGKGADRPQPKEKAKPQATTEQLRM 210
G G++G H D G+G+++ + + K + T EQ+R+
Sbjct: 342 GGSGEDGGHDDDDGEGSNKKR-RRKNYHRHTAEQIRI 377
>12_01_0339 + 2603351-2603891,2604048-2604226
Length = 239
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 264 GPFANLGRVVAFTVDHMCHSELFCSRLRFGLLLGLW 157
GPF L RV A HM E + + G+ LG W
Sbjct: 74 GPFLILARVYATVKRHMRKKEAVYNMITEGVYLGGW 109
>04_03_1037 -
21901989-21902468,21903308-21903526,21903984-21904106,
21904225-21904392
Length = 329
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 82 ARATKCGAK--GKEGKHAADKGKGADRPQPKEKAKPQATTE 198
A+ +K GA+ + KH D G+GA+ + ATT+
Sbjct: 213 AKTSKVGAEVSDRSPKHKRDSGEGAETANESRSVEEPATTQ 253
>12_02_0422 - 18934190-18934344,18935687-18936227
Length = 231
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 264 GPFANLGRVVAFTVDHMCHSELFCSRLRFGLLLGLW 157
GPF L RV A HM E + + G+ LG W
Sbjct: 74 GPFLILARVYATMKRHMRKKEAVYNMITEGVYLGGW 109
>12_01_0057 + 489788-490882,490891-492207
Length = 803
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 204 PNGTYDRP*KRRLVRGSRMVLELMEMTCRTEDEVCSALHD 323
P+G + R KRR + GSR EL M C ++ + L D
Sbjct: 449 PSGRFARA-KRRTMEGSRPNAELRVMACLFSEDHAAPLLD 487
>07_03_0993 - 23182070-23182615
Length = 181
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 221 IICAIRSCSVVACGLAFSLGCG 156
++C++ + A GLA LGCG
Sbjct: 112 VLCSVGLTAATAAGLALLLGCG 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,086,725
Number of Sequences: 37544
Number of extensions: 146862
Number of successful extensions: 424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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