Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0328.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_786| Best HMM Match : EGF (HMM E-Value=0)                           29   1.8  
SB_20744| Best HMM Match : CH (HMM E-Value=0.92)                       28   2.4  
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)             28   3.2  
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           27   7.4  
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 324 CHVGRSKPHLQSYRSSPLTPGPFANLGRVVAFTVDHMC 211
           C  G + PH +    SP  P P  N G  V F   H+C
Sbjct: 297 CREGYNGPHCER---SPCAPNPCLNGGTCVVFYTVHLC 331


>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
          Length = 1103

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 112 KEGKHAADKGKGADRP-QPKEKAKPQATTEQLRMAHM 219
           KE     DK K    P +PK+KAKPQ+  ++ +MA +
Sbjct: 793 KEKTKGRDKRKIKGSPLRPKKKAKPQSPKQRQQMARL 829


>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
          Length = 818

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 103 AKGKEGKHAADKGKGADRPQPKEK 174
           +K KE K A  KGK AD  QP E+
Sbjct: 480 SKNKEEKRAKKKGKVADAGQPSEE 503


>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 109 GKEGKHAADKGKGADRPQPKEKAKPQATTEQLRMAHMIDR 228
           G+  K A ++G+   RP P+ K KP    E+ R +   DR
Sbjct: 251 GRTQKEALEEGRRLARPNPQVKRKPSKRYER-RTSQSNDR 289


>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 79  GARATKCGAKGK--EGKHAADKGKGADRPQPKEKAKPQATTEQLR 207
           G  A K G+  K  E K AADKGK   +P  K  +KP +   + R
Sbjct: 443 GKAADKKGSAEKKTEDKKAADKGK---KPSAKTPSKPASKGRETR 484


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,338,461
Number of Sequences: 59808
Number of extensions: 168591
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)