Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0328.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49069-2|CAA88865.1|  333|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81104-3|CAD89749.1|  660|Caenorhabditis elegans Hypothetical pr...    27   5.0  

>Z49069-2|CAA88865.1|  333|Caenorhabditis elegans Hypothetical
           protein K12D12.3 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 94  KCGAKGKEGKHAADKGKGADRPQPKEKAKPQ 186
           K G  G++G+  AD  K   RP PK +  PQ
Sbjct: 221 KQGPDGRQGEKGADGRKPIGRPGPKGQRGPQ 251


>Z81104-3|CAD89749.1|  660|Caenorhabditis elegans Hypothetical
           protein M199.5 protein.
          Length = 660

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 79  GARATKCGAKGKEGKHAADKGKGAD 153
           GA  T  GAKG +G+  AD  KGAD
Sbjct: 409 GADGTP-GAKGDKGEKGADGAKGAD 432



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 79  GARATKCGAKGKEGKHAADKGKGAD 153
           GA  T  GAKG +G+  AD  KGAD
Sbjct: 472 GADGTP-GAKGDKGEKGADGAKGAD 495



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 79  GARATKCGAKGKEGKHAADKGKGAD 153
           GA  T  G+KG +G+  AD  KGAD
Sbjct: 250 GANGTP-GSKGDKGEKGADGAKGAD 273



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 79  GARATKCGAKGKEGKHAADKGKGAD 153
           GA  T  GAKG +G   AD  KGAD
Sbjct: 313 GADGTP-GAKGDKGDKGADGAKGAD 336



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 79  GARATKCGAKGKEGKHAADKGKGAD 153
           GA  T  GAKG +G+   D  KGAD
Sbjct: 364 GANGTP-GAKGDKGEKGTDGAKGAD 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,435,649
Number of Sequences: 27780
Number of extensions: 114768
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)