Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0328.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48970.1 68414.m05489 eukaryotic translation initiation facto...    31   0.28 
At3g27510.1 68416.m03439 DC1 domain-containing protein contains ...    27   6.1  
At3g25130.1 68416.m03138 expressed protein                             26   8.0  

>At1g48970.1 68414.m05489 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           guanine nucleotide exchange factor, eIF-2B, delta
           subunit [Mus musculus] GI:529428; contains Pfam profile
           PF01008: Initiation factor 2 subunit family
          Length = 756

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +1

Query: 85  RATKCGAKGKEGKHA-----ADKGKGADRPQPKEKAKPQATTEQLRMAHMIDRK 231
           RA K  AKG+  + A     A+ GK A +PQPK++  P  ++   + A  ++++
Sbjct: 308 RAAKAAAKGEGSRRADESGRANPGKAAIKPQPKKERLPVTSSVSEKTAVAVEKE 361


>At3g27510.1 68416.m03439 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 566

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 281 HLH*LQDHSRTSDESSLLRSIICAIRSCSVVAC 183
           H H L    +  +ESSL    +C I SC+   C
Sbjct: 339 HEHNLTSLGQGGEESSLCGGCVCPIGSCTFYKC 371


>At3g25130.1 68416.m03138 expressed protein 
          Length = 406

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 255 RMVLELMEMTCRTEDEVCS 311
           +MV+E   M C +E+E+CS
Sbjct: 128 KMVVEACSMECASENEICS 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,073,782
Number of Sequences: 28952
Number of extensions: 109615
Number of successful extensions: 265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)