Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0327.Seq
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.52 
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    28   1.6  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    27   2.8  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    27   3.7  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   4.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   4.9  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   4.9  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   4.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   6.4  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   6.4  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   8.5  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   8.5  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   8.5  

>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 602 WRFEFEQPGFIRWIYWGKEMVYSILLDPSYFIV 700
           W ++++ P F R   + +++V S++LDP  FIV
Sbjct: 121 WMYKYKTPWFFRNRVY-RQLVVSVMLDPDSFIV 152


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +1

Query: 316 DKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNELVNFKGEIPEETL 495
           + + ++I   I+KSSK+    + QF NS++ SD  V  L ++  L+ L+  K   P ETL
Sbjct: 103 ESHPREIEFSIQKSSKINLHTLSQFVNSKYSSDPQV--LSSIMFLDLLLKKK---PSETL 157


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 265 FKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDK 417
           +  +N VVE+K   + +D    +  Q  + S+ V+D   K  +N+R  S +
Sbjct: 301 YPTQNQVVEQKQMQQKLDSMSPEWYQAADPSNGVVDGTPKLNSNTRGSSKR 351


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 331 DIIQDIEKSSKVIDSH-VKQFNNSRFESDKLVEQLQAVDKLNEL 459
           D ++ + K++KVI  H +KQ  NS  + D LVE + A   +N+L
Sbjct: 3   DQLRTLPKNAKVIYEHCLKQIPNSLSQQD-LVEAIGASISVNDL 45


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 75  RPQKKRVL*EGNLLKNQSRNKLLNLINQTDLNLEDED 185
           +P+KK    E +  K Q +NK++  +N+ ++ +EDE+
Sbjct: 34  KPEKKDDK-EKSSKKVQKKNKVIESLNEMEVEMEDEN 69


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +1

Query: 658  NGIQYFVRSFXFYC--VFICEE 717
            N + YFVR+  FYC  +FI +E
Sbjct: 1012 NSLLYFVRALLFYCSSIFISKE 1033


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 117 KNQSRNKLLNLINQTDLNLEDEDIL 191
           KN S NKL+N IN+ +    +++IL
Sbjct: 321 KNVSNNKLINKINEVEKGSTNKEIL 345


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +1

Query: 268 KRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDK 447
           K+E  ++  +LST  ++KY   ++  +  S+KV  ++   +  +  E  K+ + L   DK
Sbjct: 532 KKEGDLIFDRLSTNSLNKYLTSLMDGL--SAKVFRTYNASYTMAE-ELKKMPKNLTLADK 588

Query: 448 L 450
           +
Sbjct: 589 I 589


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 390 KLFYVTIYDFATLFYILNYIFAVFVNRFRG*LFFYYAIFS 271
           K FY T Y+  + F+++     ++V  F    ++YY +F+
Sbjct: 467 KAFYKTFYESRSWFHLVTNFNRIWVIHFT--TYWYYTVFN 504


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 161 RPKSRGRRHSNVSFLESSQIESTTTVVAVNNVILNLKE 274
           R  S   RH+N++FL +   E   T ++   +I  LKE
Sbjct: 280 RMSSSSLRHTNINFLYNELRELLPTSISRKGIIRYLKE 317


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 667 VYHF-FSPVNPSNKSWLLKFESPSRLFLEFLLPDTD 563
           V+HF F+P +   + WL K ++    F+   L D D
Sbjct: 860 VHHFGFAPGSTPRREWLQKLDADGLPFIGIKLEDGD 895


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 5   EEMQKRMEAMKIELINK 55
           EE++KR E MK+E +NK
Sbjct: 344 EELRKRYEQMKLEKMNK 360


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 346 IEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNEL 459
           ++  S  +D+  ++FN+S  E DKL + +Q    + E+
Sbjct: 3   LKSFSTTLDTLRRRFNDSSSEEDKLEKNIQDETSIKEV 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,358
Number of Sequences: 5004
Number of extensions: 47117
Number of successful extensions: 155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)