Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0327.Seq
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     32   0.42 
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       31   0.74 
SB_58137| Best HMM Match : DUF536 (HMM E-Value=2.8)                    28   6.9  
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)                 28   6.9  
SB_38620| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_35012| Best HMM Match : Phosphodiest (HMM E-Value=0)                28   9.1  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     28   9.1  

>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +1

Query: 256 DFKFKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQ 435
           D   KR+NS+ +K+ + K +DK  KD  +++E   K  +   +QF  +  E   L ++  
Sbjct: 386 DVSTKRKNSL-DKRAAAKKMDKQLKDATKNLELEKKKYEKVKEQFTTTEQELKDLKKEHD 444

Query: 436 AV 441
           A+
Sbjct: 445 AL 446


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 223 IDNHSGGGK*CDFKFKRENSVVEKKLST-KPIDK-YCKD--IIQDIEKSSKVIDSHVKQF 390
           I N   G K    KFK   + ++KK +  K  +K Y KD      IEKS   I+  +K+ 
Sbjct: 250 ISNAETGAKQAQLKFKHSQAELKKKRAELKATEKGYEKDKQAFDAIEKSKAKIEGEMKKL 309

Query: 391 NNSRFESDKLVEQ 429
           N    + +KLV +
Sbjct: 310 NYEDGKEEKLVSR 322


>SB_58137| Best HMM Match : DUF536 (HMM E-Value=2.8)
          Length = 139

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 355 SSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNELVNFKGEIPEETLKE 501
           + K+  S   + NN         E+L+A+D+ NE ++ +  + +ETL+E
Sbjct: 2   TDKIHTSFNNRKNNEERSETTNQERLRAIDRKNEELSERNSVIDETLEE 50


>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +2

Query: 47  INKIKNNDEPAPKKASALRRKXXXXXXXXXXXXXDKSDRPKSRGRRHSNVSFLESSQIES 226
           +N ++NND  +   AS  R               D  + PK   +RH NV  +E   +E 
Sbjct: 28  LNVLQNNDNASAVDASVERSSPIPTHTTFKP---DLIETPKGTKQRHGNVKTVEFKVVEQ 84

Query: 227 TTTVVAVNNVILN 265
              V+ + N   N
Sbjct: 85  DGNVITLVNDAAN 97


>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
          Length = 466

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +2

Query: 47  INKIKNNDEPAPKKASALRRKXXXXXXXXXXXXXDKSDRPKSRGRRHSNVSFLESSQIES 226
           +N ++NND  +   AS  R               D  + PK   +RH NV  +E   +E 
Sbjct: 142 LNVLQNNDNASAVDASVERSSPIPTHTTFKP---DLIETPKGTKQRHGNVKTVEFKVVEQ 198

Query: 227 TTTVVAVNNVILN 265
              V+ + N   N
Sbjct: 199 DGNVITLVNDAAN 211


>SB_38620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 337 IQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNE 456
           IQ + +  +V  +H++  N   F   KL  + +A  KLNE
Sbjct: 409 IQALNEKGRVTCNHIQALNEKAFLQKKLKREKKAKRKLNE 448


>SB_35012| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 412

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 322 YCKDIIQDIEKSSKVIDSHVKQFNNSRFE 408
           YCKD   D+EK+ K     VK  +N RFE
Sbjct: 385 YCKDYT-DVEKNQKYCYKKVKSPDNLRFE 412


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/85 (24%), Positives = 33/85 (38%)
 Frame = +2

Query: 2    PEEMQKRMEAMKIELINKIKNNDEPAPKKASALRRKXXXXXXXXXXXXXDKSDRPKSRGR 181
            P+E+ K  +    EL N I   D    KK + LRR               +  + K++  
Sbjct: 1110 PQEITKMAKDYITELANAINPKDTSQEKKGTVLRR--FPNGAAPMFALTSQGGKSKAKAS 1167

Query: 182  RHSNVSFLESSQIESTTTVVAVNNV 256
             H   S   + Q+ +TT    V +V
Sbjct: 1168 THGYFSKTLTFQVVTTTATQLVGDV 1192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,659,178
Number of Sequences: 59808
Number of extensions: 298593
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)