Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0327.Seq
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              25   0.74 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.74 
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   3.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.1  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 111 LLKNQSRNKLLNLINQTDLNLEDEDILMY 197
           + K     +++N +N   +N+EDE++ +Y
Sbjct: 34  MAKTGINKQIINDVNDGKINIEDENVQLY 62


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +1

Query: 376 HVKQFNNSRFESDKLVEQLQAVDKLNELVNFKGEI 480
           ++ ++NN+  ++ K   ++ A+  LN+L N K  +
Sbjct: 370 NIDEYNNNDLDTKKWNNKISALRALNDLYNVKNTL 404


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 6/21 (28%), Positives = 18/21 (85%)
 Frame = +3

Query: 135 KLLNLINQTDLNLEDEDILMY 197
           ++++ IN+  +N++DE++L++
Sbjct: 42  QIIDDINEGKINMDDENVLLF 62


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 647 WGKEMVYSILLDPSYF 694
           WGK + Y+   D SYF
Sbjct: 5   WGKTVSYTNKKDESYF 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,988
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)