Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0327.Seq
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03660.1 68418.m00325 expressed protein low similarity to out...    31   1.1  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    29   3.2  
At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family pr...    29   4.3  
At1g61410.1 68414.m06920 tolA protein-related contains weak simi...    28   5.6  
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ...    28   7.4  
At5g39500.1 68418.m04783 pattern formation protein, putative sim...    27   9.8  
At1g58330.1 68414.m06635 transcription factor-related low simila...    27   9.8  
At1g14690.1 68414.m01756 microtubule associated protein (MAP65/A...    27   9.8  

>At5g03660.1 68418.m00325 expressed protein low similarity to outer
           surface protein F [Borrelia burgdorferi] GI:466482;
           contains Pfam profile PF04949: Family of unknown
           function (DUF662)
          Length = 173

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +1

Query: 268 KRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDK 447
           ++E ++V KK+ +  +DK  K +   ++K        ++ FN    E  +L+ +LQ ++ 
Sbjct: 94  RKEVTMVRKKIDS--LDKELKPLGNTVQKKETEYKDALEAFNEKNKEKVELITKLQELEG 151

Query: 448 LNELVNFK 471
            +E   FK
Sbjct: 152 ESEKFRFK 159


>At3g22790.1 68416.m02873 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +1

Query: 301  STKPIDKYCKDIIQDIEK--SSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNELVNFKG 474
            S + I+   K  ++ +E+    K +DS   Q  NS+ E  KL E L+  ++LN+L+  + 
Sbjct: 1101 SLQNINSGLKQKVETLEEILKGKEVDS---QELNSKLE--KLQESLEEANELNDLLEHQI 1155

Query: 475  EIPEETLKE 501
             + EETL++
Sbjct: 1156 LVKEETLRQ 1164


>At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 612

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
 Frame = +1

Query: 226 DNHSGGGK*CDFKFKRENSVVEKKLSTKPIDKY--CKDIIQDIEKSSKVIDSHVKQFN-- 393
           D+  G  K   F+F+     +EK LS  P D Y    ++ + +E +   +   ++++   
Sbjct: 91  DSSDGAAKRISFQFQCVTWKLEKALSNLPYDLYDISDEVGEQVELARSQLRRAMQRYGSL 150

Query: 394 NSRFESDKLVEQLQAVDKLNELVNFKGEIPEETLKELNXXXXXXXXXXXXPPRRENDL 567
           NS   S  L E ++  D  + ++  K E   E++ E              P RR + +
Sbjct: 151 NSNKFSSALSEPMER-DGFSNVIKIKAEEKLESVSETLHFGEEEEKQSSPPLRRSSSI 207


>At1g61410.1 68414.m06920 tolA protein-related contains weak
           similarity to Swiss-Prot:P19934 TolA protein
           [Escherichia coli]
          Length = 118

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 241 GGK*CDFKFKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDK 417
           G K CD K + EN+   K LS     K     ++D E S + ++     +    FES +
Sbjct: 32  GEKLCDEKTEFENATYAKFLSVLNAKKAKLRAVRDKEDSVRAVEEEESTYKAESFESGR 90


>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1933

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = -1

Query: 564 IVFSSGRYLELDQSKL*NYI-QFL*SFFWYFTLEID*FVQFIDGLQLLHKLIAFKSRIIK 388
           +V S G +  L  S++  YI +FL +  W   L I  + + +     L K   F S +  
Sbjct: 555 LVLSFGAWKSLKFSQIMRYITKFLMAAMWAIMLPIT-YSKSVQNPTGLIKF--FSSWVGS 611

Query: 387 LFYVTIYDFATLFYIL-NYIFAVF 319
             + ++YD+A   Y+L N + AVF
Sbjct: 612 WLHRSLYDYAIALYVLPNILAAVF 635


>At5g39500.1 68418.m04783 pattern formation protein, putative similar
            to SP|Q42510 Pattern formation protein EMB30 {Arabidopsis
            thaliana}; contains Pfam profile PF01369: Sec7 domain
          Length = 1443

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 295  KLSTKPIDKYCKDIIQDIEKSSKVIDSHVK 384
            KL  K  D YC+ I Q++ +  K   SHV+
Sbjct: 1101 KLKAKVADAYCERIAQEVVRLVKANASHVR 1130


>At1g58330.1 68414.m06635 transcription factor-related low
           similarity to tumor-related protein [Nicotiana glauca x
           Nicotiana langsdorffii] GI:688423, ocs-element binding
           factor 4 [Arabidopsis thaliana] GI:414613, mas-binding
           factor MBF3 [Solanum tuberosum] GI:13195751; supporting
           cDNA gi|6520153|dbj|AB028196.1|
          Length = 225

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 8   EMQKRMEAMKIELINKIKNNDE 73
           EM+  ME +K+E+I  +KN D+
Sbjct: 167 EMEDAMEVLKVEMIKAMKNADQ 188


>At1g14690.1 68414.m01756 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to SP|P32380
           NUF1 protein (Spindle poly body spacer protein SPC110)
           {Saccharomyces cerevisiae}, smooth muscle myosin heavy
           chain [Homo sapiens] GI:4417214; contains Pfam profile
           PF03999: Microtubule associated protein (MAP65/ASE1
           family)
          Length = 707

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +1

Query: 331 DIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNELVNFKGEIPEETLKELN 507
           DI   IEK S  I  +  Q N +   S  L EQ   + KLNE       + +E    LN
Sbjct: 114 DIKAQIEKMSGEISGYSDQLNKTMVGSLALDEQDLTLRKLNEYQTHLRSLQKEKSDRLN 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,675,822
Number of Sequences: 28952
Number of extensions: 221141
Number of successful extensions: 586
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)