Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0326.Seq
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   115   4e-26
Z81449-3|CAB03761.1|  300|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   6.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  115 bits (276), Expect = 4e-26
 Identities = 54/91 (59%), Positives = 58/91 (63%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 434 XXXXXXXXXXXXXXXXXQARGHIIERFPSFP 526
                            QARGH+I++    P
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 30/62 (48%), Positives = 43/62 (69%)
 Frame = +1

Query: 508 KIPELPLVVADKVQEINKTKQAVIFLRRLQGMV*ISLRCTSXQRLRAGKGKMRNRRRIQR 687
           ++ E+PLVV+DKV+   KTK+AV+FLRR      I  +  + +R RAGKGK+RNR+  Q+
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIE-KVYNSKRNRAGKGKLRNRQHKQK 203

Query: 688 KG 693
            G
Sbjct: 204 LG 205



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +3

Query: 81  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 251
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58


>Z81449-3|CAB03761.1|  300|Caenorhabditis elegans Hypothetical
           protein C46F11.3 protein.
          Length = 300

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 567 TGCHLPEAPSRHGLNILKVYKXSASS 644
           TG   PE  + HGL ILK++K +A S
Sbjct: 269 TGMSSPEMMAEHGLEILKIFKKNAES 294


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 538 RLQPREARESFNNVSSSLNER 476
           R QP  +R S NN+SSSL+ R
Sbjct: 24  RRQPHHSRSSSNNISSSLHSR 44


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 253 TNQC--RIMGYRTCCCPNSAC 309
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 253 TNQC--RIMGYRTCCCPNSAC 309
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,530,907
Number of Sequences: 27780
Number of extensions: 325277
Number of successful extensions: 1035
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)