SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0325.Seq
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    67   3e-12
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    66   5e-12
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    65   1e-11
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    59   8e-10
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    55   9e-09
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    54   2e-08
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    51   2e-07
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    50   3e-07
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    48   1e-06
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    48   2e-06
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    45   1e-05
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3...    40   3e-04
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    40   4e-04
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    39   7e-04
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    39   7e-04
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    39   9e-04
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    33   0.033
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    31   0.23 
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    30   0.30 
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    29   0.92 
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    27   3.7  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.5  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   6.5  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   8.6  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    25   8.6  

>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNNGRGR 657
           K++ +K + + HPDKNP+  D    +FKEIS AYE+L+DE KR  YD++G+EGL  G   
Sbjct: 23  KKAYRKLALKYHPDKNPNAGD----KFKEISRAYEILADEEKRATYDRFGEEGLQGGGAD 78

Query: 658 RSAADEDY---EFGYASFPFHIPRSRR 729
              + +D     FG   F   +PR  R
Sbjct: 79  GGMSADDLFASFFGGGMFGGGMPRGPR 105



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 434 YRVLGVTRTATDTEIKKAYR 493
           Y VL V  TA+  E+KKAYR
Sbjct: 8   YEVLNVDVTASQAELKKAYR 27


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 30/65 (46%), Positives = 44/65 (67%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNNGRGR 657
           K++ +K + + HPDKNPD+   A+ +F++ISEAY+VL DE+ R  YDQ+GKE     +G 
Sbjct: 25  KKAYRKLAVKYHPDKNPDDPQGASEKFQKISEAYQVLGDEKLRSQYDQFGKEKAVPEQGF 84

Query: 658 RSAAD 672
             A D
Sbjct: 85  TDAYD 89



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 428 DYYRVLGVTRTATDTEIKKAYR 493
           +YY +LG++  AT  +IKKAYR
Sbjct: 8   EYYDLLGISTDATAVDIKKAYR 29


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 28/59 (47%), Positives = 44/59 (74%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNNGRG 654
           +++ ++ + + HPDKNP N +EA  +F EI++A+EVLSD  +R++YD YG+EGLN   G
Sbjct: 24  RKAYRQLTKQWHPDKNPGN-EEAQEKFIEINKAHEVLSDPEQRKIYDAYGEEGLNGQPG 81



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/19 (52%), Positives = 18/19 (94%)
 Frame = +2

Query: 437 RVLGVTRTATDTEIKKAYR 493
           ++LGV++ A+++EI+KAYR
Sbjct: 10  QILGVSKDASESEIRKAYR 28


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYG-KEGLNNGRG 654
           K++ +K + + HPDKNP+      ++FKEIS AYEVLSD ++R++YDQYG  EG  N   
Sbjct: 23  KKAYRKLALKYHPDKNPNGE----KKFKEISLAYEVLSDPQRRKLYDQYGITEG--NAAP 76

Query: 655 RRSAADEDYEFGYASFPFHIPRSRRS 732
               A+     G+  FP   P   R+
Sbjct: 77  PPPGAEGGPGAGFGGFPGAGPGGART 102


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 23/53 (43%), Positives = 37/53 (69%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEG 636
           K+S ++ +   HPDKN +N + A  +F++++EAY+VLSD + R  YD+ GK G
Sbjct: 26  KKSYRRLAILYHPDKNRENPEAAREKFQKLAEAYQVLSDPKLREKYDKLGKVG 78


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNNG 648
           K +  K + + HPD NPD +  A  +F EI +AYEVL D +K++ +D YG     NG
Sbjct: 103 KSAYYKLAKQYHPDANPDKA--AQDKFVEIKQAYEVLQDPKKKKAFDTYGAGAFKNG 157



 Score = 29.9 bits (64), Expect = 0.40
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 422 MVDYYRVLGVTRTATDTEIKKAY 490
           M D Y+ LGV+++A+ +EIK AY
Sbjct: 84  MTDPYKTLGVSKSASASEIKSAY 106


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNP-DNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGL 639
           KES  + S   HPD++  D    A  +F+ I  AYEVLSD  K+ +YD +G++GL
Sbjct: 25  KESYYRLSRLFHPDRHTADQKAAAEEKFQIIQHAYEVLSDPSKKEIYDNFGEQGL 79


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNP-DNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNNGR 651
           K+S ++ +   HPDK P    +EA  RF+ + EAY++L D   R +YD YG    +N +
Sbjct: 23  KKSYKRLALLHHPDKAPIHEKEEAAERFRGVQEAYDILKDPESREMYDMYGMNSDSNSQ 81


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 23/47 (48%), Positives = 30/47 (63%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYD 618
           K++ +K +   HPDKN  N  EA  RFKE+ EAY +LSD   RR +D
Sbjct: 366 KKAYRKLALVYHPDKNAGNL-EAEARFKEVGEAYTILSDPESRRRFD 411



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +2

Query: 428 DYYRVLGVTRTATDTEIKKAYR 493
           D+Y++LGV++ ATD EIKKAYR
Sbjct: 349 DHYKILGVSKEATDIEIKKAYR 370


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +1

Query: 511 HPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQ 621
           HPD+NP + + A +RF+ +  A+EVLSD  KR +YDQ
Sbjct: 40  HPDRNPGDEERAVKRFQRLQLAHEVLSDATKRLIYDQ 76


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 26/76 (34%), Positives = 40/76 (52%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNNGRGR 657
           K+S +K + + HPDKN  ++  A+  FK +S+A++VLSD   R  YD+ G +       R
Sbjct: 130 KKSYKKLALQLHPDKN--HAPSADEAFKMVSKAFQVLSDPNLRAHYDRTGMD----PESR 183

Query: 658 RSAADEDYEFGYASFP 705
            SAA   +       P
Sbjct: 184 ASAASSSFSSNAGGHP 199



 Score = 33.1 bits (72), Expect = 0.043
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 431 YYRVLGVTRTATDTEIKKAYR 493
           YY +L + +T TDTEIKK+Y+
Sbjct: 114 YYEILDLKKTCTDTEIKKSYK 134


>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +1

Query: 478 KESVQKTSTERHPDK-NPDNSDEANRRFKEISEAYEVLSDERKRRVYDQ 621
           K + +K + E HPD+ +P     A  +F+ ++EAY VLSD  +R  YD+
Sbjct: 21  KYAYKKAALETHPDRVSPSARARATEQFQLVNEAYYVLSDNSRRAQYDR 69



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 428 DYYRVLGVTRTATDTEIKKAYR 493
           DYY +L +T  A+  EIK AY+
Sbjct: 4   DYYAILNITPKASAEEIKYAYK 25


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +1

Query: 490 QKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYD 618
           +KTS + HPDKNP N  +A  +F  +  AY  L D + R+ YD
Sbjct: 30  RKTSLKYHPDKNP-NDPKAAEKFHMLQLAYNALIDVQLRKAYD 71



 Score = 30.3 bits (65), Expect = 0.30
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 425 VDYYRVLGVTRTATDTEIKKAYR 493
           +DYY +LG+   A D EI +A+R
Sbjct: 8   IDYYELLGINEDAQDQEIHRAWR 30


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSD--EANRRFKEISEAYEVLSDERKRRVYDQYGK 630
           + + +K + + HPD+  D     EA   F +++ AY VLSD+++R+ YD+ G+
Sbjct: 48  RRAYRKKALQHHPDRIHDEEKKVEARIEFDKVAIAYGVLSDKKRRKHYDKTGQ 100



 Score = 28.7 bits (61), Expect = 0.92
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 425 VDYYRVLGVTRTATDTEIKKAYR 493
           +D Y VLGV + A+D  I++AYR
Sbjct: 30  IDPYSVLGVEKDASDELIRRAYR 52


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +1

Query: 511 HPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQ 621
           HPD+NP    E   +F+ I +A+EVL D + R ++DQ
Sbjct: 40  HPDRNPGREAEVLPQFQLIQKAHEVLKDPKLRELFDQ 76



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 425 VDYYRVLGVTRTATDTEIKKAY 490
           VDYY +LG   T++  EI++ Y
Sbjct: 11  VDYYTILGAESTSSYVEIRQQY 32


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 16/48 (33%), Positives = 32/48 (66%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQ 621
           K + +K + + HPD+NP   ++ N  F +I+ AY +LS++ KR+ +++
Sbjct: 26  KANYRKLALQYHPDRNP-GIEDYNEIFSQINAAYNILSNDDKRKWHEK 72


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSD-EANRRFKEISEAYEVLSDERKRRVYD 618
           K++  K   + HPDK   + +   +  FK I +AYE+LSD  +RR +D
Sbjct: 117 KKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAYEILSDPVRRRQFD 164


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 493 KTSTERHPDKNPDNSDEANRR-FKEISEAYEVLSDERKRRVYDQYG 627
           K +++  P ++P   ++ N   F+ +  A  +LSD+R+R  YD++G
Sbjct: 65  KNASQLAPTESPPEINKHNEEYFRLLLAANALLSDKRRREEYDRFG 110


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 478 KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVY 615
           KE+ +K     HPDK  +          ++ EAY+VLS E+ R+ Y
Sbjct: 21  KEAYRKALLLFHPDKCKEKPSVVYT-IDQVKEAYQVLSSEKDRQQY 65


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 511 HPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNN 645
           H   N +N+++A+    +      VLS++   +V D  GKEG ++
Sbjct: 9   HRSSNSENTNQASPSTIQSHSTQPVLSNDHSTKVNDYEGKEGASS 53


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 490 QKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNNGRG 654
           +K S   HPDKNP + +     +  +     +L +   R+ YD + K G    +G
Sbjct: 61  RKKSILYHPDKNPKSKE----LYTLLGLIVNILRNTETRKRYDYFLKNGFPRWKG 111


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 571 EAYEVLSDERKRRVYDQYGKEGLNNGRGRRSAADEDY 681
           + +EVLS   ++ +   +G +G +NG G   A   DY
Sbjct: 414 DIFEVLSTGNEKMIPTLHGSQGSSNGNG-GGAGSSDY 449


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 508 RHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLN 642
           R  D NP N+D      K+ +  ++     + RRV +QY +   N
Sbjct: 599 RTRDSNPSNTDSRESNHKKYNHFHQ---KSQTRRVMEQYDRNSWN 640


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/68 (20%), Positives = 30/68 (44%)
 Frame = +1

Query: 478  KESVQKTSTERHPDKNPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNNGRGR 657
            +++ ++   +R   ++P     A  R K  + AYE    +      +++  + +NNG G 
Sbjct: 960  RKTQERNIRKRAMKRDPAKPSSAQPR-KTFASAYEAAVYDTDDEAEEEFENDEMNNGNGG 1018

Query: 658  RSAADEDY 681
                DE +
Sbjct: 1019 DLRMDEAF 1026


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/54 (22%), Positives = 23/54 (42%)
 Frame = +1

Query: 523 NPDNSDEANRRFKEISEAYEVLSDERKRRVYDQYGKEGLNNGRGRRSAADEDYE 684
           NP++    +R  + + +A E+L +    R  +   K+G    +   S    D E
Sbjct: 256 NPEDPSNKSRACEHVEKAAEILKNVLNERENEVTDKKGKGKQKAEESTLTSDLE 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,665
Number of Sequences: 5004
Number of extensions: 47368
Number of successful extensions: 172
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -