Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0324.Seq
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 129 4e-31
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 124 1e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 33 0.042
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 29 0.91
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.2
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 2.8
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 3.7
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 26 4.8
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 4.8
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 4.8
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 4.8
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 6.4
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 26 6.4
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 8.5
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 25 8.5
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 129 bits (312), Expect = 4e-31
Identities = 62/84 (73%), Positives = 67/84 (79%)
Frame = +2
Query: 2 LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTN 181
L +TWEKLVLAAR + IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN
Sbjct: 54 LGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTN 113
Query: 182 QIQAAFREPRLLIVLDPAQDHQPI 253
I +REPRL+IV DP D Q I
Sbjct: 114 YITRTYREPRLIIVTDPRADAQAI 137
Score = 117 bits (282), Expect = 2e-27
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = +1
Query: 256 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 435
EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAW 198
Query: 436 DVVVDLFFYRDPEESEKDEQQ 498
+V+ DL+FYRDPEE E++E+Q
Sbjct: 199 EVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 124 bits (300), Expect = 1e-29
Identities = 65/120 (54%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Frame = +2
Query: 2 LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTN 181
L +TWEKLVLAAR + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN
Sbjct: 53 LGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTN 112
Query: 182 QIQAAFREPRLLIVLDPAQDHQPIMKLHMSTF-L*LLCATQTPH*DLWTLLSHATPSLPT 358
I +REPRL++V DP D Q I + + LC T ++L+H ++PT
Sbjct: 113 YITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTD-------SILNHVDIAIPT 165
Score = 120 bits (290), Expect = 2e-28
Identities = 56/83 (67%), Positives = 66/83 (79%)
Frame = +1
Query: 256 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 435
EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R W
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPW 197
Query: 436 DVVVDLFFYRDPEESEKDEQQAK 504
DV+ DL+FYRDPEE E++E+ K
Sbjct: 198 DVMPDLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 33.1 bits (72), Expect = 0.042
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 223 IGPCTRPSTHYEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 390
+ P S EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 186 LNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 0.91
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Frame = +2
Query: 41 AVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGR-------FTPGAF---TNQIQ 190
AV+ + P D+ R +RA ++ A GA + + G F T++ +
Sbjct: 354 AVLLLNQPIDIPDDRFRTLWKRASIRVCADGGANQLRNYDSSLKPDYVVGDFDSLTDETK 413
Query: 191 AAFREPRLLIVLDPAQDHQPIMKLH 265
A ++E + IV DP Q+ MK H
Sbjct: 414 AYYKEMGVNIVFDPCQNTTDFMKCH 438
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -3
Query: 455 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 357
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 283 IALCNTDSPLRFVDIAIPCNTKSSHSI 363
+ LC+ +S RF D+A+ NTK +H I
Sbjct: 85 LQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 598 IPPRLAAPAAASCFWSTPLLQEEWSA 675
+ P L APA + W+ P+ QE SA
Sbjct: 146 LKPILLAPAMNTLMWTNPITQEHLSA 171
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +1
Query: 460 YRDPEESEKDEQQAKERL---WYQLNQK*LLLSMKTGMKHWSQWLHGLKIP 603
Y+ + + K +A+E++ W+ +K L + M W QWL IP
Sbjct: 106 YKKQQGTNKSHSEAREKVTEAWFAYAKK-NLPEPPSSMSEWPQWLASHDIP 155
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 361 IGLMWWLLAREVLRLRGVLPRDQRWD 438
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 722 RRLVRPEVVLHSSCTWADHSS 660
R LVR E+V++S W DH S
Sbjct: 1233 RSLVRVELVINSQFNWDDHLS 1253
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 195 HSVNLVS*LYWTLHKTINPL*SFICQHSCDCFVQHRLPTKICGHCYPMQHQVF 353
H +N ++ L W +H + + IC + L + ICG YP+Q VF
Sbjct: 771 HEINSLTAL-WFIHSFVRTMIEIIC------LLIGILASMICGAAYPVQAAVF 816
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 416 FPVTSAGML--WLICSSTVTLKKVKRM 490
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +2
Query: 2 LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 169
+R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 92 VRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.5
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -3
Query: 77 RTHQRGSRWLRQHEQPEQVFPRYDA 3
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 229 VQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DDEHISGVLDG 50
++ E F + +S + W T + + G+RG ++ EGP D H SGV G
Sbjct: 176 IRAEAEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SADLH-SGVFGG 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,676
Number of Sequences: 5004
Number of extensions: 68855
Number of successful extensions: 188
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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