Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0324.Seq
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   128   3e-30
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   128   3e-30
10_08_0100 + 14788426-14789097                                         29   2.9  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   5.1  
06_03_0543 + 21967787-21970261                                         29   5.1  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    28   8.8  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  128 bits (310), Expect = 3e-30
 Identities = 62/103 (60%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
 Frame = +2

Query: 2   LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTN 181
           L +TWEKL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTN
Sbjct: 55  LGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTN 114

Query: 182 QIQAAFREPRLLIVLDPAQDHQPIMKLHMSTFL*L-LCATQTP 307
           Q+Q +F EPRLLI+ DP  DHQPI +  +     +  C T +P
Sbjct: 115 QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSP 157



 Score =  109 bits (263), Expect = 2e-24
 Identities = 46/81 (56%), Positives = 63/81 (77%)
 Frame = +1

Query: 256 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 435
           E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG +    +W
Sbjct: 140 ESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKW 199

Query: 436 DVVVDLFFYRDPEESEKDEQQ 498
           DV+VDLFFYRDPEE+++ E++
Sbjct: 200 DVMVDLFFYRDPEEAKEQEEE 220


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  128 bits (310), Expect = 3e-30
 Identities = 62/103 (60%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
 Frame = +2

Query: 2   LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTN 181
           L +TWEKL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTN
Sbjct: 55  LGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTN 114

Query: 182 QIQAAFREPRLLIVLDPAQDHQPIMKLHMSTFL*L-LCATQTP 307
           Q+Q +F EPRLLI+ DP  DHQPI +  +     +  C T +P
Sbjct: 115 QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSP 157



 Score =  112 bits (270), Expect = 2e-25
 Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
 Frame = +1

Query: 256 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 435
           E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +    +W
Sbjct: 140 ESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKW 199

Query: 436 DVVVDLFFYRDPEESEKDEQQAKERLWYQLNQK*LLLSMKTGMKHWS--QWLHGLKIPP 606
           DV+VDLFFYRDPEE+++ E++A         Q    ++  T  + WS  QW   +  PP
Sbjct: 200 DVMVDLFFYRDPEEAKEQEEEAPA-------QDFAAITDYTAPEQWSADQWTSDVAAPP 251


>10_08_0100 + 14788426-14789097
          Length = 223

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 732 LRLPAAGXAGSCAPLILYLGRPFFLKQGGAPKAGSCSG 619
           LRL  A  A + A  ++   R   L  GG+P+AG CSG
Sbjct: 84  LRLRRAAKAKAAAAAVVAQVRFDLLGDGGSPQAGVCSG 121


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 118 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 225
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 367 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 456
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -2

Query: 468 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 352
           V  + Q   NIP LVT   TTK + F    PPH    +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,450,673
Number of Sequences: 37544
Number of extensions: 537849
Number of successful extensions: 1754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)