Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0324.Seq
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 149 2e-36
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.026
SB_45866| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 1.3
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.2
SB_53121| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4) 29 5.2
SB_19659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 5.2
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 28 6.8
SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044) 28 9.0
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 28 9.0
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017) 28 9.0
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 9.0
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 149 bits (362), Expect = 2e-36
Identities = 69/103 (66%), Positives = 86/103 (83%), Gaps = 1/103 (0%)
Frame = +2
Query: 2 LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTN 181
+++TWEKL+LAAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTN
Sbjct: 51 VKKTWEKLLLAARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTN 110
Query: 182 QIQAAFREPRLLIVLDPAQDHQPIMKL-HMSTFL*LLCATQTP 307
QIQAAFREPRLLIV DP DHQP+ + +++ + C T +P
Sbjct: 111 QIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSP 153
Score = 137 bits (331), Expect = 1e-32
Identities = 62/91 (68%), Positives = 73/91 (80%)
Frame = +1
Query: 256 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 435
EASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAREVLR+RG + R W
Sbjct: 136 EASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPW 195
Query: 436 DVVVDLFFYRDPEESEKDEQQAKERLWYQLN 528
+++ DL+FYRDPEE+EK+EQ A R + N
Sbjct: 196 EIMPDLYFYRDPEEAEKEEQAALARQQEEAN 226
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 36.3 bits (80), Expect = 0.026
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 452 KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 285
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 284 ITGMLTY 264
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_45866| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 388
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 675 GRPFFLKQGGAPKAGSCSGCSQAGRYLQ 592
G P++ + GG+PK C+ G+YLQ
Sbjct: 26 GEPWYGRLGGSPKKNWCASTKDTGQYLQ 53
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 455 NKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVLHKA 285
N+ T ++ STP + + N+ ++P EW ++ H + L+GES
Sbjct: 6 NRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKYEFT 65
Query: 284 ITG 276
+TG
Sbjct: 66 LTG 68
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 355 HSIGLMWWLLAREVLRLRGVLP 420
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_53121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 652 RGCSKSRKLQRVQPGGAVSSAHEATGSSVSF 560
R C ++++ +QPGG+ SS AT + F
Sbjct: 57 RNCGNGQRIEFLQPGGSTSSRAAATAVELQF 87
>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
Length = 158
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +3
Query: 51 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNL 209
PSRTPL ++ +G +S+ Y VLR+ R H ++ ++R L ++N+
Sbjct: 49 PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100
>SB_19659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 562 MKHWSQWLHGLKIPPRLAAPAAASCFWSTPLLQE 663
MKH++ L IP L AP + SC PL+ E
Sbjct: 1 MKHFTDTLISANIPHELLAPTSNSCSPGDPLVLE 34
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 465 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 316
+V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 28.3 bits (60), Expect = 6.8
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Frame = -2
Query: 354 GRLGVAWDSNVHKS*WGVCVAQSNHRNVDI*SFIMG*WSCAGSNT----IKRRGSRNAAW 187
G +A S +H V V Q N V + F+ G SC S+ K RGS A
Sbjct: 441 GGCHIAESSTMHAEESDVKVGQGNELPV-VEHFLGGRNSCKTSSVQLTDSKPRGSSVAII 499
Query: 186 IWLVKAPGVKRPAIGVAPVCAANFSTAR*PKGRD 85
+K P V P I + ++ T P+G D
Sbjct: 500 NQPIKVPDVNAPGIAIVCQTSSGHQTDSKPRGDD 533
>SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +1
Query: 577 QWLHGLKIPPRLAAPAAASCFWSTPLLQEEWSAQVQDEWSTTSGRTSRRQPER 735
+WLH L+IPPR + LL +W + + + +R+ E+
Sbjct: 350 EWLHSLRIPPRFCLSFEENMVDGFLLLSLDWKGCDLERYLMVDSKVVKRKLEQ 402
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 235 CRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 134
CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 897 CRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +1
Query: 19 KTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCG 153
+TC C+ C C +L+ C + AHRC CG
Sbjct: 594 RTCGRCNVCYDAENDSVC-----DSLKHTCSDDEATAHRCSLTCG 633
>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
Length = 899
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 82 DDEHISGVLDGYDSTSSQNK 23
++EHI+ VLDGYD S +K
Sbjct: 60 NEEHIAFVLDGYDELPSSSK 79
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 301 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 432
+SPL + I +PCNT +S+ W+LLA + ++ VL D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533
>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
Length = 1243
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 82 DDEHISGVLDGYDSTSSQNK 23
++EHI+ VLDGYD S +K
Sbjct: 346 NEEHIAFVLDGYDELPSSSK 365
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -3
Query: 431 RWSRGSTPRSLSTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSGESVLH 291
RWS +TPR TS N H+ P+ + D+ H A + +L S ++
Sbjct: 62 RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,103,493
Number of Sequences: 59808
Number of extensions: 582806
Number of successful extensions: 2175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2174
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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