Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0324.Seq
(736 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 128 4e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 124 5e-29
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 124 5e-29
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami... 31 1.0
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 4.2
At3g52430.1 68416.m05766 phytoalexin-deficient 4 protein (PAD4) ... 28 5.6
At2g07020.1 68415.m00803 protein kinase family protein contains ... 28 5.6
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 27 9.8
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 128 bits (309), Expect = 4e-30
Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Frame = +2
Query: 2 LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTN 181
L +TWEKL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTN
Sbjct: 55 LGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTN 114
Query: 182 QIQAAFREPRLLIVLDPAQDHQPIMKLHMSTF-L*LLCATQTP 307
Q+Q +F EPRLLI+ DP DHQPI + + + C T +P
Sbjct: 115 QMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSP 157
Score = 116 bits (280), Expect = 1e-26
Identities = 68/141 (48%), Positives = 88/141 (62%), Gaps = 11/141 (7%)
Frame = +1
Query: 256 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 435
E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WLLAR VL++RG + Q+W
Sbjct: 140 EGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKW 199
Query: 436 DVVVDLFFYRDPEESE-KDEQQAKERLWYQLNQK*LLLSMKTGMKHWSQWLHGLKIP--- 603
DV+VDLFFYR+PEE++ +DE +A + Y L + + GM QW +IP
Sbjct: 200 DVMVDLFFYREPEETKPEDEDEAGPQAEYG-----ALPAPEYGMVGGDQWTTA-QIPDAA 253
Query: 604 -------PRLAAPAAASCFWS 645
P AAPAAAS WS
Sbjct: 254 WPGEGQAPISAAPAAAS--WS 272
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 124 bits (300), Expect = 5e-29
Identities = 56/84 (66%), Positives = 67/84 (79%)
Frame = +2
Query: 2 LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTN 181
L +TW+KL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTN
Sbjct: 56 LGKTWDKLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTN 115
Query: 182 QIQAAFREPRLLIVLDPAQDHQPI 253
Q+Q +F EPRLLI+ DP DHQPI
Sbjct: 116 QMQTSFSEPRLLILTDPRTDHQPI 139
Score = 109 bits (263), Expect = 1e-24
Identities = 47/84 (55%), Positives = 63/84 (75%)
Frame = +1
Query: 256 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 435
E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG + Q+W
Sbjct: 141 EGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKW 200
Query: 436 DVVVDLFFYRDPEESEKDEQQAKE 507
DV+VDLFFYR+PEE++++ + E
Sbjct: 201 DVMVDLFFYREPEEAKQEGDEEAE 224
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 124 bits (300), Expect = 5e-29
Identities = 56/84 (66%), Positives = 67/84 (79%)
Frame = +2
Query: 2 LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTN 181
L +TW+KL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTN
Sbjct: 56 LGKTWDKLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTN 115
Query: 182 QIQAAFREPRLLIVLDPAQDHQPI 253
Q+Q +F EPRLLI+ DP DHQPI
Sbjct: 116 QMQTSFSEPRLLILTDPRTDHQPI 139
Score = 85.8 bits (203), Expect = 3e-17
Identities = 37/65 (56%), Positives = 48/65 (73%)
Frame = +1
Query: 256 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 435
E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG + Q+W
Sbjct: 141 EGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKW 200
Query: 436 DVVVD 450
DV+V+
Sbjct: 201 DVMVN 205
>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
protein low similarity to SP|P13685 Poly(A) polymerase
(EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 527
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 457 FYRDPEESEKDEQQAKERLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 597
F D + +K + ++R W QLN K L LS K + L+GLK
Sbjct: 45 FATDSDRQDKVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91
>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 146
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 301 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 438
D L ++A+ C TKS + + ++ V + +P +RWD
Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94
>At3g52430.1 68416.m05766 phytoalexin-deficient 4 protein (PAD4)
identical to phytoalexin-deficient 4 protein
[Arabidopsis thaliana] GI:6457331; contains Pfam profile
PF01764: Lipase
Length = 541
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 577 QWLHGLKIPP-----RLAAPAAASCFWSTPLLQEEWSAQVQDEWSTTSGRTSRRQ 726
+W G+K+P R A+ +CFW+ +EW + + E S R+ R+
Sbjct: 426 KWQKGVKVPEECVRSRYASTTQDTCFWAKLEQAKEWLDEARKESSDPQRRSLLRE 480
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 161 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPIMKLHMSTFL*LLCA 295
TP TNQ++ A E +LDP PI + + + L CA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEALILAKIGLQCA 664
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 360 RVGRLGVAWDSNVHKS 313
R GR+G WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,927,971
Number of Sequences: 28952
Number of extensions: 394384
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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