Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0322.Seq
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...   129   4e-31
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    31   0.17 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    27   3.7  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score =  129 bits (312), Expect = 4e-31
 Identities = 74/172 (43%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
 Frame = +3

Query: 3   IASEVLK*AGVYDPNRVLGVTTLDVSXXATFVGEINGVDPTSVAVPVIGGHSGITIIPIL 182
           I  + L+  GV+ P  + GVTTLD    + F  ++       + +PV+GGHSG TI+P+L
Sbjct: 155 IFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVVGGHSGATIVPLL 214

Query: 183 SQCQPALKLSDPAKIKALTERIQELVPKL*RRRPXGGSATLSMAYAGARLTASVLRGLKG 362
           SQ    ++L+   K  AL  RIQ    ++ + +   GSATLSMAYAGAR+ +SVLR L G
Sbjct: 215 SQ--GGVELTGE-KRDALIHRIQFGGDEVVKAKAGAGSATLSMAYAGARMASSVLRALAG 271

Query: 363 ESNVVECAYVKSSLTE---ATYFASPVVLGKSGVEKVLGYGTLNEFEQQLLK 509
           ES V EC +V+S L +     +FAS V LGK GV+ +   G +N++E+ LLK
Sbjct: 272 ESGVEECTFVESPLYKDQGIDFFASRVTLGKDGVDTIHPVGKINDYEESLLK 323


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 36  YDPNRVLGV-TTLDVSXXATFVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQPA-LKL 209
           +   RV+G  T +D +     +G++ G+DP SV   +IG H G + + + S    A L L
Sbjct: 152 FPAERVIGSGTIIDTARFQYLIGKLYGLDPQSVNADIIGEH-GDSELAVWSHASIAGLSL 210

Query: 210 SD 215
           +D
Sbjct: 211 AD 212


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 277 EGRXAAPRPSPWRTPARGSRPP 342
           +GR A P P P   P+ G +PP
Sbjct: 356 QGRSAPPPPPPRSAPSTGRQPP 377


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 105 INGVDPTSVAVPVIGGHSGITIIPILSQCQPALKLSDPAKIK 230
           + G  P    +P+IGGH G  ++  +      LK+ D   +K
Sbjct: 53  LQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVK 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,625
Number of Sequences: 5004
Number of extensions: 36453
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)