Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0322.Seq
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   176   1e-44
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    29   2.6  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  176 bits (429), Expect = 1e-44
 Identities = 94/177 (53%), Positives = 122/177 (68%), Gaps = 3/177 (1%)
 Frame = +3

Query: 3   IASEVLK*AGVYDPNRVLGVTTLDVSXXATFVGEINGVDPTSVAVPVIGGHSGITIIPIL 182
           IASEVLK AGVYDP RV GVTTLDV     FV E+ G D +   VPV+GGH+GITIIP+L
Sbjct: 154 IASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGITIIPLL 213

Query: 183 SQCQPALKLSDPAKIKALTERIQELVPKL*RRRPXGGSATLSMAYAGARLTASVLRGLKG 362
           SQ +P+ K S+  +I  LT RIQ+   ++   +   GSATLSMA AGAR   +++RG+KG
Sbjct: 214 SQVKPSTKFSE-EEISKLTPRIQDAGTEVVNAKAGAGSATLSMALAGARFANALVRGIKG 272

Query: 363 ESNVVECAYVKSSLTEAT-YFASPVVLGKSGVEKVLGYGTLNEFEQQLLKR--PSLN 524
           E N V+CAYV S   +   YF++PV LG +GVEK+LG G ++ +EQ+L+    P LN
Sbjct: 273 EKN-VQCAYVASDAVKGVEYFSTPVELGPNGVEKILGVGKVSAYEQKLIDASVPELN 328


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 54  LGVTTLDVSXXATFVGEINGVDPTSVAVPVIGGHSGITII 173
           LG+T+L +S     +    G+ PT+ A+P+IG + G+TI+
Sbjct: 241 LGITSL-LSTTVFLMMVAEGMPPTAEALPLIGIYFGVTIM 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,646,176
Number of Sequences: 27780
Number of extensions: 217911
Number of successful extensions: 740
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)