Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0322.Seq
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 114 VDPTSVAVPVIGGHSGITII 173
           + PTS+A+P++G +   T+I
Sbjct: 302 IPPTSLAIPLLGKYLLFTMI 321


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 469 PRTFSTPLLPSTTGLAKYV 413
           P+     LLPS TGL+ Y+
Sbjct: 255 PKMTPQSLLPSQTGLSPYL 273


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 75  VSXXATFVGEINGVDPTSVAVPVIGGHSGITIIPI-LSQCQPALKLS 212
           +S    F+  +  + PTS+ VP++G +    +I + +S C   + L+
Sbjct: 284 ISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLN 330


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 75  VSXXATFVGEINGVDPTSVAVPVIGGHSGITIIPI-LSQCQPALKLS 212
           +S    F+  +  + PTS+ VP++G +    +I + +S C   + L+
Sbjct: 284 ISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLN 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,830
Number of Sequences: 438
Number of extensions: 3062
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)