Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0321.Seq
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    26   0.37 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       25   0.49 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.9  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 573 GGVASSDDVNDISSAAQEILSTGISSSTAEPGSDISSSGPNRAVINIIPQPM 728
           GG+          SAA  I S+G++S  A P    +SSG   +V +    P+
Sbjct: 4   GGIYEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPL 55


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -1

Query: 239 PQAQWSHRHLLNYCQANHR*YRQPGYPGYRLEATLPRHRENRCE 108
           P     H H +N     HR   QPG+ G      +   + N CE
Sbjct: 35  PSICGEHGHCVNLPGVGHRCQCQPGFTGKYCHENINDCKVNPCE 78


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 289 SGAMNEESAYIGDNCLSTPADTEENSPQNDQD 384
           +G  N +++ + D   S  A   ENS   D D
Sbjct: 84  NGDTNGDTSQVDDQNESLEASVNENSKNGDDD 115


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 563 IFIHCT*FIILNAWCSF 513
           IFI C  F ++  W SF
Sbjct: 132 IFITCELFFVILLWISF 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,962
Number of Sequences: 336
Number of extensions: 3004
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)