Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0320.Seq
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.72 
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   1.7  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    26   5.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   6.7  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 60  IYLKEKQLEM*KHSTPIWERFNKHYHHVGDT 152
           IY+   +  + + S  ++ RFNKHY H G T
Sbjct: 784 IYVAPTKALVNQLSAEVYARFNKHYPHAGQT 814


>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 101

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 478 ILQHTNSVTSPSVSKEWSVEQALVNKPLP--ILTDPLC 371
           +++HTN +T PS+    ++   L   PLP  IL   LC
Sbjct: 43  LIKHTNQLTFPSIPHSSAISTLLKQTPLPTRILFLSLC 80


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 273 STNKKRESPFDLPCPLLHCKTKYKDVS 193
           S NK  E+  D+  P++H + K KD+S
Sbjct: 406 SRNKFFETSSDIESPIIHLRFKDKDIS 432


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -2

Query: 694 YDWETQVMPGQSQPPRTWHSALSIDCRNK*RTSWGTGGPIESLVKF 557
           + WET  +   S PPR+ HS   +  +          GP+  L  F
Sbjct: 233 WSWETPFLHSSSPPPRSNHSVTLVQGKIFVHGGHNDTGPLSDLWLF 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,530,523
Number of Sequences: 5004
Number of extensions: 81805
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)