Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0320.Seq
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644...    31   1.3  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    30   1.7  
11_06_0429 + 23396355-23396531,23396609-23396855,23397721-233978...    29   4.0  

>01_06_0959 -
           33362810-33363125,33363309-33363475,33363583-33364410,
           33364483-33364719,33365455-33365871,33365951-33366412,
           33367197-33367382
          Length = 870

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  NNIYLKEKQLEM*KHSTPIWERFNKHYHHVGD 149
           +N Y+ E +L+     TP+W R   H+  +GD
Sbjct: 687 HNFYISESELQTHVVPTPLWSRSGMHFQVMGD 718


>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
            35420909-35420931,35421647-35421843,35421964-35422159,
            35422382-35422481,35423288-35423374,35424053-35424282,
            35424678-35424763,35425148-35425271,35425415-35428573,
            35430014-35430019
          Length = 1566

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 568  KIQWGPRCPNLCAIYSCSQWTGPNATY 648
            K +W  +CP LC  +S  Q+TGP   Y
Sbjct: 1425 KHKWQSKCPVLCNEFSRMQFTGPQLFY 1451


>11_06_0429 +
           23396355-23396531,23396609-23396855,23397721-23397896,
           23398173-23398409
          Length = 278

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +2

Query: 521 DVDTVTYKNVDYEFHQRFNGAPGAPTCALFIPAV---NGQGRMPRTGWLGLPWHYLCFPV 691
           D D    +  +    +RF+     P C   I  V      G   R   +G+P+HYLC P+
Sbjct: 23  DGDQTLVQQTELNVSERFSALLWMPHCQHKISKVWENANDGVSVRYHHVGIPYHYLCEPL 82

Query: 692 IHYSG 706
           +   G
Sbjct: 83  LKRLG 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,169,353
Number of Sequences: 37544
Number of extensions: 550125
Number of successful extensions: 1263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)