Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0320.Seq
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        29   3.1  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_40926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)             28   9.4  

>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
 Frame = +2

Query: 155 QEIYLITALWDTEETSLYFVLQCSKGHGKSKGLSRFLL-----VL*TASVYT-------- 295
           +++ L  ALW TE  + YFV+Q  KGHG   GL+  L+     VL +  V          
Sbjct: 6   EDVLLANALWATERANPYFVMQRRKGHG-GGGLTSLLIGTLDNVLDSKLVLEYKLLCSEF 64

Query: 296 KPGPYRLLHQTPNSGIYY 349
           +P P+R+L Q  NS + Y
Sbjct: 65  QPAPFRILLQLANSDVSY 82



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 629 QGRMPRTGWLGLPWHYLCF 685
           +GR+PR GWL L  ++LCF
Sbjct: 125 KGRVPRQGWLYLSVNHLCF 143


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 617 AVNGQGRMPR-TGWLGLPWHYLCFPVIHYSG 706
           A N  G  P  T WL  P HY  FP  HY G
Sbjct: 855 AANFHGSQPYGTPWLFHPSHYTPFPCPHYQG 885


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 57  NIYLKEKQLEM*KHSTPIWERFNKHYHHV 143
           ++YLK   +   K  TP+   F  HYHH+
Sbjct: 13  DVYLKTVIMSKTKQPTPVLHLFCHHYHHI 41


>SB_40926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 401 ATANLDGSVVPAMQLLLHNRSRSSEFDVIACRAQVWCR 288
           A A+ DG   PAM+ +LHN +   +FD      + WC+
Sbjct: 63  AGASADG---PAMEGVLHNITGILDFDGFRVNKEFWCK 97


>SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)
          Length = 541

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 198 VSSVSHSAVIKYISCRCHPHDDNAY 124
           +++  H +VIK  +C CH H    Y
Sbjct: 400 MNTYKHISVIKRFACNCHGHSTKCY 424


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,072,595
Number of Sequences: 59808
Number of extensions: 645604
Number of successful extensions: 1385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)