Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0320.Seq
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32540.1 68417.m04632 flavin-containing monooxygenase / FMO (...    29   4.4  
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r...    28   5.8  
At1g12170.1 68414.m01409 F-box family protein contains F-box dom...    28   5.8  
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica...    28   7.7  

>At4g32540.1 68417.m04632 flavin-containing monooxygenase / FMO
           (YUCCA) identical to gi:16555352
          Length = 414

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 132 NAY*IVPKLVLNVSTFLIVFLLNKCYLLQFLQHNL*LVSELGF 4
           N   ++P+ +L VSTF +   L KC  L+ +   L L++ L F
Sbjct: 214 NTVHVLPREILGVSTFGVGMTLLKCLPLRLVDKFLLLMANLSF 256


>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1568

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 264 KKRESPFDLPCPLLHCKTKYKDVSSVSHSAVIKYISCRCHPHDDNA 127
           KK  +P D     L C+   K     S++  I+ I   C  H D+A
Sbjct: 5   KKAPAPLDSALIKLECEKALKSFGRGSYNKAIRLIKDSCSRHQDSA 50


>At1g12170.1 68414.m01409 F-box family protein contains F-box
          domain Pfam:PF00646
          Length = 364

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 8  PNSLTSYKLCCKNWSK*HLFKRKTIRN 88
          P SLT +K+ CK W+   LFK K+  N
Sbjct: 20 PLSLTRFKIVCKQWNT--LFKSKSFVN 44


>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 981

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 347 NRSRSSEFDVIACRAQV---WCRRTLSKVPTRSERALLIYH 234
           NR R +   +I C A V   W R    KV   ++ ++LIYH
Sbjct: 337 NRKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIYH 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,533,424
Number of Sequences: 28952
Number of extensions: 434492
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)