BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesV0319.Seq (571 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g37420.1 68415.m04589 kinesin motor protein-related 29 1.7 At4g13370.1 68417.m02090 expressed protein 29 2.9 At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 28 5.0 At5g56430.1 68418.m07044 F-box family protein contains F-box dom... 27 8.8 At5g26920.1 68418.m03210 calmodulin-binding protein similar to c... 27 8.8 >At2g37420.1 68415.m04589 kinesin motor protein-related Length = 1039 Score = 29.5 bits (63), Expect = 1.7 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Frame = +1 Query: 67 DLDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVN----------QWTSAVVESCLGQL 216 D+ +EN+ + D+ + N + T H VN + T A+VE+C+ Q+ Sbjct: 889 DMAKENEKVQDEFTSTFSSMDANFVSRTNELHAAVNDSLMQDRENKETTEAIVETCMNQV 948 Query: 217 TKLQKPYKYVVT 252 T LQ+ + V+ Sbjct: 949 TLLQENHGQAVS 960 >At4g13370.1 68417.m02090 expressed protein Length = 673 Score = 28.7 bits (61), Expect = 2.9 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Frame = +1 Query: 64 NDLDEENQF--IVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPY 237 N L N+F I +DV K K A ENS ++ Q N ++ W A + + L ++ L K + Sbjct: 483 NPLRIINEFLKIYEDVMKYSKIASENSFSLSSDQQNPISLWVEAALATNL-EVVSLVKSH 541 Query: 238 K 240 + Sbjct: 542 E 542 >At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related similar to ATPase [Homo sapiens] GI:531196; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 1287 Score = 27.9 bits (59), Expect = 5.0 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = +1 Query: 130 ENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYV 246 E S+ AY N+W S S + T ++K Y Y+ Sbjct: 360 EFSVRDDAYLSGETNRWWSGASSSAVSYQTDIEKGYSYM 398 >At5g56430.1 68418.m07044 F-box family protein contains F-box domain Pfam:PF00646 Length = 360 Score = 27.1 bits (57), Expect = 8.8 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -3 Query: 266 LQYCQVTTYLYGFCNLVNCPRHDSTTAEVH 177 L++ + + GFC+LVN P + AE+H Sbjct: 163 LKHLDIVDHFSGFCSLVNMP--EQLDAEIH 190 >At5g26920.1 68418.m03210 calmodulin-binding protein similar to calmodulin-binding protein TCB60 GI:1698548 from [Nicotiana tabacum] Length = 492 Score = 27.1 bits (57), Expect = 8.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 240 ICSDLTILQKNGAGLHTSSSCYWDNTT 320 + DLT++ KNG G+ T + DN++ Sbjct: 98 LTGDLTVMLKNGVGVITGDIAFSDNSS 124 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,241,137 Number of Sequences: 28952 Number of extensions: 217851 Number of successful extensions: 512 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 499 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 512 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1102220672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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