Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0318.Seq
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14706| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_57342| Best HMM Match : Arf (HMM E-Value=0)                         39   0.005
SB_56255| Best HMM Match : Arf (HMM E-Value=0)                         37   0.019
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         37   0.019
SB_11310| Best HMM Match : Arf (HMM E-Value=0)                         36   0.045
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.078
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       30   1.7  
SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)                 30   1.7  
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)                        30   1.7  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            28   6.8  
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09)          28   9.0  

>SB_14706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 26/53 (49%), Positives = 37/53 (69%)
 Frame = +3

Query: 573 LAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEGNIGSFLGKEGKDFEFSHI 731
           +AK ++ IK  LEKEIN  RVT+S  LQ +D S  +  + +GK+GKDFEF+ +
Sbjct: 1   MAKSARAIKAQLEKEINTQRVTRSAALQGLDGSSKS--ALVGKKGKDFEFADV 51


>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
          Length = 457

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +3

Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYIT-SNKTLKIVDLPGQERLRNKFFEQHKSSAKG 431
           KT +  +L   +   T  ++  N+E      N T  + D+ GQ+++R + +  +   A+G
Sbjct: 122 KTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGGQDKIR-RLWRHYFQGAEG 180

Query: 432 IVFVIDSINIQKEIRDVAEYLYTIL 506
           I+FV+DS + ++ I +V E L  +L
Sbjct: 181 IIFVVDSAD-KERIFEVREELTRVL 204


>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
          Length = 181

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 28/114 (24%), Positives = 54/114 (47%)
 Frame = +3

Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGI 434
           KT +  +L   +   T  ++  N+E     N +  + D+ GQ+++R   +  +  + +G+
Sbjct: 30  KTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWRHYFQNTQGL 88

Query: 435 VFVIDSINIQKEIRDVAEYLYTILWIRSFRETQLPF*YCATNQDQPLAKGSQVI 596
           +FV+DS N ++ + +  E L  +L     R+  L     A  QD P A  +  I
Sbjct: 89  IFVVDS-NDRERVGEAREELNRMLNEDELRDAVLL--VFANKQDLPNAMNAAEI 139


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = +3

Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGI 434
           KT +  RL   +   T  ++  N+E     N +  + D+ GQ+++R   +  +    +GI
Sbjct: 9   KTTILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIR-ALWRVYYQGCQGI 67

Query: 435 VFVIDSINIQK 467
           +FV+DS + ++
Sbjct: 68  IFVVDSADRER 78


>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
          Length = 255

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 26/106 (24%), Positives = 48/106 (45%)
 Frame = +3

Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGI 434
           KT +   L   +   T  ++  N+E     N    + D+ GQ+++R   +  +    +G+
Sbjct: 103 KTTILYHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGGQDKIR-LLWRLYFQETQGL 161

Query: 435 VFVIDSINIQKEIRDVAEYLYTILWIRSFRETQLPF*YCATNQDQP 572
           +FV+DS N +  I++  E L+ +L     +   L     A  QD P
Sbjct: 162 IFVVDS-NDRDRIQEAKEELFKLLKEEELKRAALL--VLANKQDLP 204


>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 19/84 (22%), Positives = 44/84 (52%)
 Frame = +3

Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGI 434
           KT +  +L   +   T  ++  N+E     N +  + D+ GQ+++R   +  +  + +G+
Sbjct: 30  KTTILYKLKLGEIVTTIPTIGFNVESVEYKNISFTVWDVGGQDKIR-PLWRHYFQNTQGL 88

Query: 435 VFVIDSINIQKEIRDVAEYLYTIL 506
           ++V+DS N ++ + +  E L  +L
Sbjct: 89  IYVVDS-NDRERVNESKEELNKML 111


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +3

Query: 378  QERLRNKFFEQHK----SSAKGIVFVIDSINIQKEIRDVAEYLYTILWIRSFRETQLPF* 545
            Q R R +F  + K    S  + +  V+D IN +KE+R   E +   L      +T+    
Sbjct: 905  QSRKRKRFLTKDKNDFESKKRKLTHVVDGINTKKELRKKQEDMKRALAAAKVVKTERVNV 964

Query: 546  YCATNQDQPLAKGSQVIKGL 605
                 Q  P+ KG  V +G+
Sbjct: 965  AKGVTQGMPVTKGRVVTQGM 984


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +3

Query: 114  RTDPERSTIHNLT*PYCSSSNPHILVDFLSKVYSSQLSIVNGPIRLWKTLL-FVRLAYSQ 290
            + +P    I+N   P  S+   ++ + F+  VY+  + IVN   +  + +  F+R A ++
Sbjct: 1288 KRNPNELRINNYNPPCLSAWRANMDIQFVLDVYACAVYIVNYISKGQRGMSEFLREACTE 1347

Query: 291  YRQTFTSMKENIEEYITSNKTLKIVDLPGQE 383
             RQ + ++K+ + +    +K L  V++  QE
Sbjct: 1348 ARQGYKTIKKQVRD--IGSKFLNNVEISAQE 1376


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 159 YCSSSNPHILVDFLSKVYSSQLSIVNGPI 245
           YC++SNPH  + FL+KV +  +S+    +
Sbjct: 812 YCNASNPHASMRFLAKVPAPPVSVAGSSV 840


>SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)
          Length = 638

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
 Frame = +3

Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGI 434
           KT  FVR   +    T  S    IE+  T    L++    GQ  L N+   Q  S  K  
Sbjct: 351 KTASFVRACAAYCFITIPS----IEDIFTK---LQLYLYSGQVALANQALSQADSFFKAA 403

Query: 435 VFVIDSI--NIQKEIRDVAEYLYTILWIRSFRETQLPF*---YCATNQDQPLAKGSQVIK 599
           + ++  +  N++ + +  A   Y I ++ +F  T L      Y AT+QD P      +++
Sbjct: 404 ISLVPDVPRNLEVDSKLKASEPYLINFLNNFLSTLLVVPSSLYFATHQDNPETGVLYLVR 463

Query: 600 GLLE 611
           GLL+
Sbjct: 464 GLLD 467


>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 943

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +3

Query: 114  RTDPERSTIHNLT*PYCSSSNPHILVDFLSKVYSSQLSIVNGPIRLWKTLL-FVRLAYSQ 290
            + +P    I+N   P  S+   ++ + F+  VY+  + IVN   +  + +  F+R A ++
Sbjct: 769  KRNPNELRINNYNPPCLSAWRANMDIQFVLDVYACAVYIVNYISKGQRGMSEFLREACTE 828

Query: 291  YRQTFTSMKENIEEYITSNKTLKIVDLPGQE 383
             RQ + ++K+ + +    +K L  V++  QE
Sbjct: 829  ARQGYKTIKKQVRD--IGSKFLNNVEISAQE 857


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
 Frame = -3

Query: 449 INHKHNSLSTTLVLFKEFISQSL--LSRQINYFQCFI-RSYILFNIFFHRSKSLSVLRVS 279
           I H H SLSTT+V     +S ++  ++R ++     + RS  +  +  HRS S++++ V 
Sbjct: 255 IVHVHRSLSTTIVHVNRPLSITIVHVNRPLSITIVHVHRSLSITIVHVHRSLSITIVHVH 314

Query: 278 ESYKQQSLPESDRPINNT 225
            S    ++   +RP++ T
Sbjct: 315 RSL-STTIVYVNRPLSIT 331



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 449 INHKHNSLSTTLVLFKEFISQSL--LSRQINYFQCFI-RSYILFNIFFHRSKSLSVLRVS 279
           I H H SLSTT+V     +S ++  + R ++     + RS  +  +  HRS S++++ V 
Sbjct: 310 IVHVHRSLSTTIVYVNRPLSITIVHVHRSLSITIVHVHRSLSITIVHVHRSLSITIVHVH 369

Query: 278 ES 273
            S
Sbjct: 370 RS 371


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
 Frame = -1

Query: 445 ITNTIPLALLLCCSKNLFLSLSCP--------GRSTIFNVLLEVIYSSIFSFIE 308
           +T T  + L++  +   FLS++CP         R+ +   L  ++YSS+FSF++
Sbjct: 496 MTYTSQVLLVVVLTFERFLSITCPIFHRNHVTFRAAVITSLTILLYSSVFSFVQ 549



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 433 IPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSI 323
           IPL LL+ C K  F    C   S++   +++++  SI
Sbjct: 640 IPLKLLVTCKKGKFSGQVCNPNSSVVKYVIQIVQWSI 676


>SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09)
          Length = 535

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +3

Query: 159 YCSSSNPHILVDFLSKVYSSQLSIVNGPIRLWKTLLFVRLAYSQYRQTFTSMK--ENIEE 332
           +C+ S   + VDF S  +   + +   P    K +  ++ ++S     F + K   NIEE
Sbjct: 311 WCAESGEFLRVDFGSVKHVRAIYMQGHPAEA-KWVAKIKFSHSADGLFFKTFKGYNNIEE 369

Query: 333 YITSNKTLKIVDLPGQERLRNKFFEQHKSSAKG 431
           ++ +  T KIV L     L  +    H +  +G
Sbjct: 370 FMANVDTHKIVRLSMDPYLFTRILHIHPTEFEG 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,790,263
Number of Sequences: 59808
Number of extensions: 415256
Number of successful extensions: 1310
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)