Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0317.Seq
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    33   0.059
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    27   2.2  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.8  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   9.0  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.0  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   9.0  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   9.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 32.7 bits (71), Expect = 0.059
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 196 HRGHQSVRQVSDQDEGEAVSVPCITVS-CMNISIDEYAARTNIKRTVSIEELVSISQSAC 372
           H   QS RQ+  +     +S+   TVS    +  +   ++TN K+      L  +S S C
Sbjct: 777 HDSSQSARQLKARSTATTISISLSTVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTC 836

Query: 373 TAGDVSRMSR 402
            A  V+++ +
Sbjct: 837 NANSVNKLMK 846


>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -3

Query: 333 HCPFYVGPSRILVYGYVHAGDSNARHRHGLTFILVRNLSNRLMAPMSTSAGRSNQTL 163
           HC      S  ++YG  + G +  + RH L  ++V   ++ +  P +  + + N TL
Sbjct: 21  HCDLKRRVSIKIIYGLGNPGSAFVKSRHSLGKLMVSMYADSMAFPKNWPSTKENLTL 77


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 543 VDSPARFPAPVRSGVSMHQQQLPIQSEPVQSRHADSSSCQSQL---VLNDSRHPGHVAS 376
           VDS  RFP+   +G++  +  LP  +  V ++H    +  + L    LN +    H ++
Sbjct: 715 VDSTPRFPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHAST 773


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 552 LSPVDSPARFPAPVR 508
           LSP  SPAR P+P+R
Sbjct: 214 LSPTRSPARTPSPIR 228


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 658 FFRPFERSCFSSLWKSKTSAQF 593
           FF+ F  SCF +L+  K S  F
Sbjct: 158 FFKVFSMSCFKNLFSKKFSRAF 179


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 590 WXRALAQVGVAHGYLQ*IHQLAF 522
           W + + Q G+  G L+ +HQ+AF
Sbjct: 485 WRKMMYQKGIRFGGLENLHQIAF 507


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 510 VLAQESELVNLLEIAVCDANLRQRSGPA 593
           +L +ESE +NLL+ +V    L Q +GP+
Sbjct: 550 LLPKESEYINLLKSSVSANILEQPNGPS 577


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 220 QVSDQDEGEAVSVPCITVSCMNISIDEYAAR 312
           Q  D+DE E    P + V  +N S++  AAR
Sbjct: 412 QQVDEDEDEDYEPPEVDVQTINASVEREAAR 442


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 386  TSPAVQADCEIDTSSSIDTVLFMLVLAAYSSMDMFMQETVMHGTDTASPSSWS 228
            +S  V +     TS S    +   V  A +S        V  GTD+A+ SSW+
Sbjct: 877  SSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWT 929


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,688
Number of Sequences: 5004
Number of extensions: 61672
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)