Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0317.Seq
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0098 + 9148424-9148682,9148817-9148905 31 0.76
09_04_0466 - 17838344-17838631 31 0.76
10_01_0244 + 2549102-2549158,2549205-2549334,2549422-2549559,255... 31 1.3
04_03_0497 + 16566601-16566696,16567026-16567102,16567903-165680... 30 1.8
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 4.1
03_05_0695 - 26851370-26851495,26852949-26853398 29 4.1
03_05_0572 + 25727299-25727405,25727720-25727780 29 4.1
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 29 5.4
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 28 7.1
11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584 28 9.4
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 28 9.4
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 28 9.4
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165 28 9.4
01_06_1477 + 37645143-37647425 28 9.4
>10_05_0098 + 9148424-9148682,9148817-9148905
Length = 115
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 652 RPFERSCFSSLWKSKTSAQFAGPERWRRLASHTAISSRFTSSLSC 518
R F+ S+ W+ PERWR+ A+ + RF S C
Sbjct: 29 RSFDEKTRSACWRKAAVVMGRHPERWRQDAAGNVVCRRFWSCHGC 73
>09_04_0466 - 17838344-17838631
Length = 95
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -3
Query: 618 GRVRRVPSSLXPSVGAGWRRTR 553
GR R PS+ SVG GWRRTR
Sbjct: 25 GRWRMRPSTTSSSVGRGWRRTR 46
>10_01_0244 +
2549102-2549158,2549205-2549334,2549422-2549559,
2550078-2550205,2550346-2550396
Length = 167
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 350 CLSHNRPAPLATCPGCLESFRTSWDWHEE 436
C+S ++P CP CLE FR S ++ EE
Sbjct: 91 CVSEDKPDEEDVCPICLEVFRYSPEYDEE 119
>04_03_0497 +
16566601-16566696,16567026-16567102,16567903-16568047,
16568265-16568309,16568338-16569294,16569603-16569896,
16571129-16571242,16571826-16571913,16571995-16572050,
16572250-16572304,16572417-16572460
Length = 656
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 414 QAGIGTRNCQRDGSALAQTVSEAVADAC*RRSVLAQESELVNLLEIAVCDAN 569
+ G G+ N GSA++Q E +A R+ L+ +S L N+L I+ C++N
Sbjct: 352 EMGDGSANA---GSAVSQGSKEVLATVLPERANLSPDSCLDNILPISTCNSN 400
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 564 RRTRLSPVDSPARFPAPVRSGVSMHQQQLPIQSEPVQSRHADSSSCQS 421
R+ P+ S FP SGVS HQ Q Q +P + + SS QS
Sbjct: 682 RQNGSGPIASLHSFPRRTSSGVSPHQSQ---QQQPEEQQSIPQSSNQS 726
>03_05_0695 - 26851370-26851495,26852949-26853398
Length = 191
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +3
Query: 255 CAVHYCLLHEHIHRRV--CG*DQHKKDSVN--RGAG--VYLTIG 368
C HYC LH H + G + H++D + GAG V LT+G
Sbjct: 12 CGGHYCQLHHHRPEEIAGAGAESHRRDGSSGCGGAGPMVVLTLG 55
>03_05_0572 + 25727299-25727405,25727720-25727780
Length = 55
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 387 VQDVSSHSGQAG-IGTRNCQRDGSALAQTVSEA 482
V+ V SH G+ G +GTR + G ALA T +EA
Sbjct: 3 VEGVDSHGGKVGGMGTRGGKVGGMALAATRAEA 35
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 83 LRLPAESESGEVTTGARDGAXTVLRCLKVWFDLPADVLIGAINLF 217
LR+P ++ + VT GA A + W D+P V++ + F
Sbjct: 310 LRIPTQTANRRVTNGAHQRASQQYSYNRFWQDIPILVMVSMLAYF 354
>01_07_0383 -
43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 655 FRPFERSCFSSLWKSKTSAQFAGPERWRRLASHTAISSRF 536
F + SC SS+W + + PE W H + SRF
Sbjct: 355 FNEKDPSCHSSMWDAFLAFSRRFPEAWSYCNIHKVVFSRF 394
>11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584
Length = 144
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 232 QDEGEAVSVPCITVSCMNISIDEYAARTNIKRTVSIEELVSISQSAC 372
Q+EG+A VP + + C S+ +Y I+ I L+++ Q AC
Sbjct: 100 QEEGDAACVPIVILLCATYSVPKYLG-LGIRSKYLI--LINVLQFAC 143
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 265 ITVSCMNISIDEYAARTNIKRTVSIEELVSISQSACTAGDVSRMSRVIQDKLGLARGTVS 444
IT I Y N + S E IS ++CT ++ +++ ++ G+ +GT++
Sbjct: 197 ITAPAKGADIPTYVLGVN-EGDYSHEVANIISNASCTTNCLAPFVKILDEEFGIVKGTMT 255
Query: 445 VT 450
T
Sbjct: 256 TT 257
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 27.9 bits (59), Expect = 9.4
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +3
Query: 399 SSHSGQAGIGTRNCQRDGSALAQTVSEAVADAC*RRSVLAQES--ELVNLLEIAV-CDAN 569
+SHS QAG T A + SE ++ + R+ A E E N+ ++ V CD +
Sbjct: 754 ASHSLQAGDDTAMNLLASVAGEISKSELISSSPSPRNSSANEQGCEGDNIGKLKVECDVS 813
Query: 570 LRQRSGPANWALVLLFHKLEK 632
L Q +GP+N ++ K EK
Sbjct: 814 LPQHAGPSNEVEKVISEKSEK 834
>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
Length = 476
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 93 PRSLRAAK*RPALGMAXAPCCAVSKSGSIYP 185
PR+ R K RPA +A APC A +K + P
Sbjct: 4 PRTTRCPK-RPAPQLAVAPCAATAKRRRLAP 33
>01_06_1477 + 37645143-37647425
Length = 760
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 19 GPATVRYAQRVPAPRAKVSAETAL 90
GPA +RY QR AP AK++ L
Sbjct: 446 GPAILRYIQRSGAPTAKIAFRATL 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,356,114
Number of Sequences: 37544
Number of extensions: 482763
Number of successful extensions: 1509
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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