Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0317.Seq
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41) 31 1.3
SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_28422| Best HMM Match : TerC (HMM E-Value=4) 28 7.2
SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13) 28 7.2
SB_38183| Best HMM Match : EGF (HMM E-Value=3.6e-08) 28 7.2
SB_49382| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_24547| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-18) 28 9.5
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26) 28 9.5
>SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 346 LVSISQSACTAGDVSRMSRVIQDKLG 423
L+ +S +CT D+ RM R+I DKLG
Sbjct: 14 LIGVSGLSCTPSDLLRMERIILDKLG 39
>SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)
Length = 376
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 531 ARFP---APVRSGVSMHQQQLPIQSEPVQSRHADSSSCQSQLVLNDSRHPGHVA 379
AR+P A RS HQ Q+P + P Q DS+ +S SR P +A
Sbjct: 304 ARYPVDSAKARSPRGQHQSQIPTWTAPQQETPVDSAIAKSPRGQRQSRKPPWIA 357
>SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 663 IPFSDHSNEVVFLVYGRVRRVPSSLXPSVGAGWRRTRLSPV 541
IP HSN + F GR+ V ++ S G G + T PV
Sbjct: 753 IPEITHSNSMRFFPPGRIMHVVKTVSVSRGCGQKETMFEPV 793
>SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 65 QKSQPKLRLPAESESGEVTTGARDGAXTVLRCLKVWFDLPADVLIGA 205
Q+ P LR E+ +T AR+ VL C K WFD + ++ A
Sbjct: 64 QRRLPLLRNATVGEAEGLTEFARECTPRVLSCRKNWFDCAKNKVMNA 110
>SB_28422| Best HMM Match : TerC (HMM E-Value=4)
Length = 465
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 291 HRRVCG*DQHKKDSVNRGAGVYLTIGLHRWRRVQDVSSHSGQAGI 425
HR V + K+ VN Y+ + H WR + D+ +H GQ+GI
Sbjct: 338 HRMVVN-PKPKERCVNDTVLYYVNLAQHWWRTI-DLLTHLGQSGI 380
>SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13)
Length = 580
Score = 28.3 bits (60), Expect = 7.2
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = -1
Query: 500 SACISNSFRYSLSQCRAVTLTVPRANPSLS*MTRDILDTSPAVQADCEIDTSSSIDTVLF 321
+A IS+S +S + + L R + + + D + +AD ID+
Sbjct: 210 NAIISHSSIRCVSLIKIIMLRYYRPSDRVHVLCTDTTLITMYQKADAAIDSER------- 262
Query: 320 MLVLAAYSSMDMFMQETVMHGTDTASPSSWSETCRTD*---WPR*ARPRVDRTR 168
+L+ A S M Q V HG +ASP T D WPR + PR RTR
Sbjct: 263 LLLSAVLSWAAMNGQLDVYHGGTSASPMLLMGTKTPDKRRAWPRASLPRQPRTR 316
>SB_38183| Best HMM Match : EGF (HMM E-Value=3.6e-08)
Length = 51
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 447 HADSSSCQSQLVLNDSRHPGHVASGAGRL*DRHQLLY*HC-PFYVGP 310
HA+ SC V+N + HP +G GR +R HC P + GP
Sbjct: 2 HAERDSCHRLAVVNHNCHPNPCQNG-GRCEERDDGYDCHCVPPFQGP 47
>SB_49382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 534 PARFPAPVRSGVSMHQQQLPIQ--SEPVQSRHADSSSCQSQLVLNDSR 397
P +P P+ +S H LP++ + + + +CQS L+L+ ++
Sbjct: 137 PYTYPLPLTRNLSFHTYPLPLKGDGQSILIPYPQQGTCQSILILDPNK 184
>SB_24547| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-18)
Length = 195
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 304 HTRLWICSCRRQ*CTAQTRPHLHLGQKPVE 215
HTRL CSC + H+H G+KP +
Sbjct: 137 HTRLRPCSCTNPSSNMKFVNHVHEGEKPFQ 166
>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
Length = 307
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -3
Query: 570 GWRRTRLSPVDSPARFP----APVRSGVSMHQQQLPIQSEPVQSRHADSSSCQSQLVLND 403
G R++++ P +P + A RS HQ Q+P + P Q DS+ +S +
Sbjct: 131 GQRQSKIPPWTAPQQETPVESARARSPRGQHQSQIPTWTAPQQDPPVDSARARSPRGQHH 190
Query: 402 SRHP 391
S+ P
Sbjct: 191 SKKP 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,954,009
Number of Sequences: 59808
Number of extensions: 528637
Number of successful extensions: 1445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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