Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0317.Seq
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22470.1 68414.m02808 expressed protein                             31   0.84 
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    29   2.6  
At1g50710.1 68414.m05702 expressed protein                             29   3.4  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    29   4.5  
At5g44130.1 68418.m05401 fasciclin-like arabinogalactan-protein,...    28   7.8  
At5g38037.1 68418.m04583 hypothetical protein                          28   7.8  
At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein si...    28   7.8  
At4g10845.1 68417.m01766 hypothetical protein                          28   7.8  
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas...    28   7.8  
At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenas...    28   7.8  

>At1g22470.1 68414.m02808 expressed protein
          Length = 146

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = -2

Query: 685 ENLFRXSHSFFRPFERSCFSSLWKSKTSAQFAGPERWRRLASHTAISSRFTSSLSCASTL 506
           E+L + S  F+        SSL K+ +S   A  E     +S TAISS ++S  SC S L
Sbjct: 60  ESLSKLSSEFYDYSSSMSSSSLAKTMSSCSSASSESESDFSS-TAISSYYSSVSSCLSPL 118

Query: 505 RRQH 494
           + ++
Sbjct: 119 QHRY 122


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = -3

Query: 252  HGLTFILVRNLSNRLMAPMSTSAGRSNQ-TLRQ-RNTVXAPSLAPVVTSPLSDSAGKR 85
            +G   +L+RNLS+   +  S +    +Q ++RQ R+ +    L+P++  P+SDS  +R
Sbjct: 1598 YGEDNMLMRNLSSERSSGNSVTLDSGSQMSMRQSRSALLWSVLSPIINMPISDSKRQR 1655


>At1g50710.1 68414.m05702 expressed protein
          Length = 423

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 17  SAQQLYATLNEYLLLEQKSQPKLRLPAESESGEV 118
           ++ Q+Y TL   L++ + +Q KLRLP  S+ GE+
Sbjct: 100 NSPQVYETLEHRLVVAEAAQ-KLRLPLISDGGEI 132


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +1

Query: 355 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 450
           IS ++CT   ++  ++V+ ++ G+ +GT++ T
Sbjct: 230 ISNASCTTNCLAPFAKVLDEEFGIVKGTMTTT 261


>At5g44130.1 68418.m05401 fasciclin-like arabinogalactan-protein,
           putative similar to gi_13377784_gb_AAK20861
          Length = 247

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 62  EQKSQPKLRLPAESE---SGEVTTGARDGAXTVLRCLK 166
           + +S  K   P+ESE   SGE+ TG   G   V+ CLK
Sbjct: 207 DSESSKKAAAPSESEKSGSGEMNTGLGLGLGLVVLCLK 244


>At5g38037.1 68418.m04583 hypothetical protein
          Length = 226

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 324 FYVGPSRILVYGYVHAGDSNARHRHGLTFI 235
           F VG SR+ V+G    G    R  HG TF+
Sbjct: 51  FLVGKSRVYVFGEKITGFRFWRENHGFTFL 80


>At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein
           similar to acetylornithine deacetylase
           (Acetylornithinase, AO; N-acetylornithinase, NAO)
           [Dictyostelium discoideum] SWISS-PROT:P54638
          Length = 440

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 223 PVEQIDGPDEHVRG*IEPDFETAQHG-ACAIPSAGRH 116
           PV +   PDE++RG +   F+ A  G AC + S G H
Sbjct: 329 PVSKYVLPDENLRGRLTLSFDEASAGVACNLDSPGFH 365


>At4g10845.1 68417.m01766 hypothetical protein
          Length = 164

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 583 ERWRRLASHTAISSRFTSSL 524
           ERWRRL S   +SSR TS L
Sbjct: 65  ERWRRLFSFYKVSSRVTSYL 84


>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
           A, chloroplast (GAPA) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit A
           identical to SP|P25856 Glyceraldehyde 3-phosphate
           dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit A) {Arabidopsis thaliana}
          Length = 396

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 355 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 450
           IS ++CT   ++   +V+  K G+ +GT++ T
Sbjct: 208 ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 239


>At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenase,
           chloroplast, putative / NADP-dependent
           glyceraldehydephosphate dehydrogenase, putative similar
           to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A,
           chloroplast precursor (EC 1.2.1.13) (NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit A)
           {Arabidopsis thaliana}; contains Pfam profiles PF02800:
           Glyceraldehyde 3-phosphate dehydrogenase C-terminal
           domain, PF00044: Glyceraldehyde 3-phosphate
           dehydrogenase NAD binding domain
          Length = 399

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 355 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 450
           IS ++CT   ++   +V+  K G+ +GT++ T
Sbjct: 211 ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,242,543
Number of Sequences: 28952
Number of extensions: 349953
Number of successful extensions: 1023
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)