Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0314.Seq
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.9  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   1.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   3.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 619 RWGHSPPRLANLAASPGPRHGRQVKRPRRGPDLRS 515
           R+GH+P  + +   +P P     V   RRGP +++
Sbjct: 308 RYGHTPNVVLDEEGNPCPDIIIDVHGTRRGPKIKT 342


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 120 TVQKFDGLCVLPLNIVNEKIYVFLWFWFM 206
           T+  F  + V+P   +N  IY+   FWFM
Sbjct: 206 TMAHFKIIQVVPYCYINCLIYLIGGFWFM 234


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 18  VSFTEMEPEERVDPMARVFPKVTKCTFHKYGPS 116
           V  ++ EPE++ +    ++P    CT +   PS
Sbjct: 172 VDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPS 204


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 22  ASQKWSPRNAWTRWPE 69
           A  KW PR  W+  P+
Sbjct: 115 AMGKWCPRREWSSPPD 130


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 22  ASQKWSPRNAWTRWPE 69
           A  KW PR  W+  P+
Sbjct: 271 AMGKWCPRREWSSPPD 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,882
Number of Sequences: 336
Number of extensions: 3596
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)