Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0314.Seq
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    30   0.39 
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    29   0.52 
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.8  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -3

Query: 578  LARSAPRTPSKAAETRT---GPSFTNSHTDDPNLTVLQ*YTGVTILCRFLQTSPLARSSV 408
            L  S P T S A  T T     S  NS T   + TVL   T +T       ++P+  SSV
Sbjct: 1866 LNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 1925

Query: 407  LYKSVDQCSSRV 372
            L  S    SS V
Sbjct: 1926 LNSSTPITSSSV 1937



 Score = 29.9 bits (64), Expect = 0.39
 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -3

Query: 578  LARSAPRTPSKAAETRT---GPSFTNSHTDDPNLTVLQ*YTGVTILCRFLQTSPLARSSV 408
            L  S P T S A  T T     S  NS T   + TVL   T +T       ++P+  SSV
Sbjct: 2058 LNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 2117

Query: 407  LYKSVDQCSSRV 372
            L  S    SS V
Sbjct: 2118 LNSSTPITSSSV 2129



 Score = 29.5 bits (63), Expect = 0.52
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -3

Query: 566 APRTPSKAAETRTGPSFTNSHTDDPNLTVLQ*YTGVTILCRFLQTSPLARSSVLYKSVDQ 387
           A  TP   +   T P+  NS T   + +VL   T +T       ++P+  SSVL  S   
Sbjct: 361 ANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPI 420

Query: 386 CSSRV 372
            SS +
Sbjct: 421 TSSSI 425



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -3

Query: 578  LARSAPRTPSKAAETRT---GPSFTNSHTDDPNLTVLQ*YTGVTILCRFLQTSPLARSSV 408
            L  S P T S    T T     S  NS T   + TVL   T +T       ++P+  SSV
Sbjct: 930  LNSSTPITSSTGLNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 989

Query: 407  LYKSVDQCSSRV 372
            L  S    SS V
Sbjct: 990  LNSSTPITSSSV 1001



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -3

Query: 578 LARSAPRTPSKAAETRT---GPSFTNSHTDDPNLTVLQ*YTGVTILCRFLQTSPLARSSV 408
           L  S P T S    + T     S  NS T   + TVL   T +T       ++P+  SSV
Sbjct: 402 LNTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 461

Query: 407 LYKSVDQCSSRV 372
           L  S    SS V
Sbjct: 462 LNSSTPITSSSV 473



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -3

Query: 569  SAPRTPSKAAETRT---GPSFTNSHTDDPNLTVLQ*YTGVTILCRFLQTSPLARSSVLYK 399
            S P T S    T T     +  NS T   + TVL   T +T       ++P+  SSVL  
Sbjct: 1497 STPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSVLNS 1556

Query: 398  SVDQCSSRV 372
            S    SS V
Sbjct: 1557 STPITSSTV 1565


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 387 MFFPSWYKTNQSPICSLRATASICSC 310
           +F P  YKTN +PI  L  T ++CSC
Sbjct: 256 IFTPILYKTNNNPII-LPITVTVCSC 280


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 609 ILRLVWRTWRPRPVRATDAK*SGRDADRTFVH*QSHGRPKLNCPS 475
           I+ ++ R W PR +   D   +  D D   V   S G P++   S
Sbjct: 184 IVMVIARIWGPRLLANKDQNNNNEDLDSNLVSKDSEGTPQITYAS 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,711
Number of Sequences: 5004
Number of extensions: 63127
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)