Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0314.Seq
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 30 1.7
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 29 3.8
07_03_0424 - 18060133-18061581 29 3.8
03_05_0390 - 23738892-23739392 29 3.8
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104... 29 5.1
03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810... 29 5.1
03_05_0092 - 20714102-20717902 28 6.7
01_01_1114 - 8820996-8821538,8826753-8827178 28 6.7
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 8.8
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 28 8.8
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 28 8.8
02_05_0656 + 30671152-30671227,30671330-30671464,30671591-306716... 28 8.8
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 619 RWGHSPPRLANLAASPGPRHGRQVKRP 539
RWG R ++ PGPRH VKRP
Sbjct: 21 RWGRRKGRPPCPSSLPGPRHDHAVKRP 47
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 236 QRNSTQDR*YHKPKPEEHVDLLVDD---IQWQNTQAIEFLHRTGWTVFMEGAFSYFRKHS 66
Q NS + PE H+D+LV+D N + ++F RTG ++ A+ R +
Sbjct: 143 QHNSPSQDMQPRLVPEAHLDVLVEDKCAKNQLNREKVQFQQRTGSRSYIAHAYVVQRGLA 202
Query: 65 GHRVHAFLGLH 33
+ A L LH
Sbjct: 203 LYSAFAALVLH 213
>07_03_0424 - 18060133-18061581
Length = 482
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 250 PFRWTPRPSLLAARTQSPCATRANRSRSPQATDRRLVRFVPTRE 381
PF W RP ++ AR Q A + + + R+VR+ P R+
Sbjct: 314 PFLWVLRPDMVTARLQHADLQEAVVAAAAGDSKARVVRWAPQRD 357
>03_05_0390 - 23738892-23739392
Length = 166
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/21 (66%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 507 TVSERRSGPRL-GRFTWRPWR 566
T ERR G RL GR TWR WR
Sbjct: 3 TAVERRRGRRLMGRRTWRRWR 23
>03_05_1143 +
30709825-30709926,30710105-30710260,30710356-30710439,
30710769-30710882,30711019-30711111,30711888-30711977,
30712157-30712227,30712300-30712374,30712481-30712568,
30712748-30712806,30712893-30712956,30713030-30713095,
30713283-30713435,30713522-30713626,30713739-30713974,
30714104-30714173,30714286-30714339,30714501-30714557,
30714662-30714741,30716056-30717919
Length = 1226
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 301 ATACAQQVETDAGSSETAM-RYNKEIPLRIDSIINQNQRNT*IFSLTIFNGKTHKPSNFC 125
A A A Q E +A + + + N+E+ R+ +I N+R ++ I NG+ ++
Sbjct: 654 AIATASQREAEAHETAIGLAKANEELRTRLTVLIEDNKRLVELYEHAIANGEVNQDGGHP 713
Query: 124 TVP 116
+P
Sbjct: 714 AIP 716
>03_05_0100 -
20779387-20779641,20779824-20780629,20780757-20781011,
20781107-20781221,20781301-20781353,20781517-20781777,
20782804-20782854,20783081-20783329,20784765-20784990,
20785968-20786132
Length = 811
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 188 EHVDLLVDDIQWQNTQAIEFLHR-TGWTVFMEGAFSYFRKHSGHRVHA 48
E++ + D+ + T + + R T + + +F+ + KHSGH V+A
Sbjct: 652 ENLQYYIRDVNFYTTGGDQHIFRSTSYASSIAESFASYEKHSGHAVYA 699
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 607 SPPR--LANLAASPGPRHGRQVKRPRRGPDLRSLTV 506
SPPR +A+ ++S HG+ K + PDLR L V
Sbjct: 130 SPPRNAVASSSSSSSGSHGKSSKGNKSNPDLRGLGV 165
>01_01_1114 - 8820996-8821538,8826753-8827178
Length = 322
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 628 VVGRWGHSPPRLANLAASPGPRHGRQVKRPRRGP 527
+VG W R LAA P H R V RPR P
Sbjct: 170 LVGSWSELA-RSGTLAAGARPNHDRSVFRPRATP 202
>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 308 PQEQIEAVAR-KLQIGDWFVLYQLGKNIDPLIYKELMTELAEK 433
P++ + V +++GDW+ L G P Y EL ELA+K
Sbjct: 876 PKDHVCTVEELSVKVGDWYYLDGTGHERGPFSYSELQ-ELAKK 917
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 271 PSLLAARTQSPCATRANRSRSPQATDRRLVRFVPTRE 381
P +R++SP R SRSP +RL R RE
Sbjct: 305 PKQAQSRSRSPSPARKRESRSPSPRSKRLRRAQSERE 341
>03_02_0882 -
12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 262 TPRPSLLAARTQSPCATRANRSRSPQATDRRLVRFVPTRE 381
TP+ A + SP RA R+ SP + L P R+
Sbjct: 609 TPKTGTAAEKRNSPVPQRARRNSSPPVLPKELTPKAPARK 648
>02_05_0656 +
30671152-30671227,30671330-30671464,30671591-30671676,
30672184-30672278,30672431-30672556,30672659-30672809
Length = 222
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 353 DWFVLYQLGKNIDPLIYKELMTEL 424
+W +LY++GK+ D L+ KE + E+
Sbjct: 179 EWKILYKIGKDKDGLLRKEAVREV 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,610,355
Number of Sequences: 37544
Number of extensions: 463618
Number of successful extensions: 1451
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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