Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0314.Seq
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   29   3.0  
SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1)                   28   9.0  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_3868| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 104 IRSIRYGAEIRWLVCFAIEYRQREDLRVPLVLVYDTIYPEWN 229
           I  I Y ++  W+  ++  Y+  E  + P V +YD+   EWN
Sbjct: 480 IEGIAYDSKREWVYIYSKAYKHLEKYKYPNVQIYDS---EWN 518


>SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1)
          Length = 186

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 726 VATISVKMLRLEESGPLGSRWR 661
           +  ISV +LRL E+G L S WR
Sbjct: 148 IGNISVAILRLHETGVLDSLWR 169


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 613 GHSPPRLANLAASPGPRHGRQVKRP 539
           GHS PR  N +    PR G +V +P
Sbjct: 868 GHSSPREGNSSGHSSPRDGMEVDKP 892


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 695  WKSQDHSEAGGVIILKRFWNTM 630
            W + D S AG V  +KR+W+TM
Sbjct: 1078 WFADDASGAGSVSEIKRWWDTM 1099


>SB_3868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -3

Query: 716 FQSKCC---AWKSQDHSEAGGVIILKRFWNTM 630
           FQ  C     W   D S AG V  +KR+W+TM
Sbjct: 193 FQGACNIKQCWFEDDASGAGSVSEIKRWWDTM 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,333,129
Number of Sequences: 59808
Number of extensions: 514711
Number of successful extensions: 1616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)