Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0314.Seq
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02360.1 68414.m00182 chitinase, putative similar to chitinas...    30   1.4  
At3g54420.1 68416.m06019 class IV chitinase (CHIV) almost identi...    29   2.4  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    29   2.4  
At4g14350.2 68417.m02211 protein kinase family protein contains ...    29   4.2  
At4g14350.1 68417.m02210 protein kinase family protein contains ...    29   4.2  
At3g23310.1 68416.m02940 protein kinase, putative contains prote...    29   4.2  
At3g14120.2 68416.m01786 expressed protein similar to Nuclear po...    28   7.4  
At3g14120.1 68416.m01785 expressed protein similar to Nuclear po...    28   7.4  
At2g23050.1 68415.m02748 phototropic-responsive NPH3 family prot...    28   7.4  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    27   9.8  

>At1g02360.1 68414.m00182 chitinase, putative similar to chitinase
           precursor GI:5880845 from [Petroselinum crispum]
          Length = 272

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 99  HKYGPSGTVQKFDGLCVLPLNIVNEKIYVF---LWFW 200
           + YGP+G    FDGL   P  + N  +  F   LWFW
Sbjct: 152 YNYGPAGRALGFDGL-RNPETVSNNSVIAFQTALWFW 187


>At3g54420.1 68416.m06019 class IV chitinase (CHIV) almost identical
           to class IV chitinase from GI:2597826 [Arabidopsis
           thaliana]
          Length = 273

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 105 YGPSGTVQKFDGLCVLPLNIVNEKIYVF---LWFW 200
           YGP+GT   FDGL   P  +  + +  F   LW+W
Sbjct: 183 YGPAGTAIGFDGLNA-PETVATDPVISFKTALWYW 216


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 732 AQVATISVKMLRLEESGPLGSRWRH 658
           ++V   S KM RLE+ G LG  W+H
Sbjct: 546 SRVGASSSKMRRLEDEGGLGRSWKH 570


>At4g14350.2 68417.m02211 protein kinase family protein contains
           similarity to Swiss-Prot:O13310 serine/threonine-protein
           kinase orb6 [Schizosaccharomyces pombe]
          Length = 551

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 353 DWFVLYQLGKNIDPLIYKELMTELAEKFEGNDK 451
           +W  LYQ+     P +  EL T+  EKFE  DK
Sbjct: 422 EWGKLYQMKAAFIPQVNDELDTQNFEKFEETDK 454


>At4g14350.1 68417.m02210 protein kinase family protein contains
           similarity to Swiss-Prot:O13310 serine/threonine-protein
           kinase orb6 [Schizosaccharomyces pombe]
          Length = 551

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 353 DWFVLYQLGKNIDPLIYKELMTELAEKFEGNDK 451
           +W  LYQ+     P +  EL T+  EKFE  DK
Sbjct: 422 EWGKLYQMKAAFIPQVNDELDTQNFEKFEETDK 454


>At3g23310.1 68416.m02940 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 568

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 353 DWFVLYQLGKNIDPLIYKELMTELAEKFEGNDK 451
           +W  LYQ+     P +  EL T+  EKFE  DK
Sbjct: 425 EWEKLYQMKAAFIPQVNDELDTQNFEKFEETDK 457


>At3g14120.2 68416.m01786 expressed protein similar to Nuclear pore
           complex protein Nup107 (Nucleoporin Nup107) (107 kDa
           nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
           norvegicus]
          Length = 1077

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 337 AGYGFDLLLWRKATACAQQ--VETDAGSSETAM 245
           +G+G  L LW+ A+ CA +   E D G  E A+
Sbjct: 382 SGFGNQLRLWKWASYCASEKIAEQDGGKHEVAV 414


>At3g14120.1 68416.m01785 expressed protein similar to Nuclear pore
           complex protein Nup107 (Nucleoporin Nup107) (107 kDa
           nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
           norvegicus]
          Length = 1101

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 337 AGYGFDLLLWRKATACAQQ--VETDAGSSETAM 245
           +G+G  L LW+ A+ CA +   E D G  E A+
Sbjct: 382 SGFGNQLRLWKWASYCASEKIAEQDGGKHEVAV 414


>At2g23050.1 68415.m02748 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 481

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 563 PRTPSKAAETRTGPSFTNSHTDDPNLTVLQ*YTGVTILCRFLQTSPLARSSVLYKSVDQ- 387
           P+T SK +  +    +    + DPNL  LQ +     L   L + P     VLY+++D  
Sbjct: 342 PKTHSKVSVAKLIDGYLAEKSRDPNLP-LQNFLS---LAETLSSFPRHSHDVLYRAIDMF 397

Query: 386 CSSRVGTKRTSRRSVACGL 330
                G  ++ ++ V CGL
Sbjct: 398 LKEHSGISKSEKKRV-CGL 415


>At4g15180.1 68417.m02328 SET domain-containing protein contains Pfam
            profile PF00856: SET domain
          Length = 2326

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 338  KLQIGDWFVLYQLGKNIDPLIYKELMTELAEK 433
            +L IGDWF     G+   PL + EL  +L EK
Sbjct: 977  QLHIGDWFYTDGAGQEQGPLSFSELQ-KLVEK 1007


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,707,357
Number of Sequences: 28952
Number of extensions: 348380
Number of successful extensions: 951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)