Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0313.Seq
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    25   0.49 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    25   0.49 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    25   0.49 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.0  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 621 QRFAVPSGPRAMQMLSDTENLISVSAXQIWXQLEQ 725
           +RF  P G   +Q+    ENL+  S+ + W +  Q
Sbjct: 45  ERFLAPKGFGGVQISPPNENLVVTSSNRPWWERYQ 79


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 621 QRFAVPSGPRAMQMLSDTENLISVSAXQIWXQLEQ 725
           +RF  P G   +Q+    ENL+  S+ + W +  Q
Sbjct: 46  ERFLAPKGFGGVQISPPNENLVVTSSNRPWWERYQ 80


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 621 QRFAVPSGPRAMQMLSDTENLISVSAXQIWXQLEQ 725
           +RF  P G   +Q+    ENL+  S+ + W +  Q
Sbjct: 46  ERFLAPKGFGGVQISPPNENLVVTSSNRPWWERYQ 80


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 403 CCETCPGTL 377
           CC+TCPG L
Sbjct: 104 CCKTCPGDL 112


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +1

Query: 97  NWYPRTKGLRAENWRKNNRHYVLEERGLYRDGTLGC 204
           +W    K  + +N  +  +  ++ +  L  DG+L C
Sbjct: 89  DWKDSVKNCKLKNKERKVKPLLITDEPLCPDGSLAC 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,595
Number of Sequences: 336
Number of extensions: 3638
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)