Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0313.Seq
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    30   0.41 
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   2.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   3.8  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    27   3.8  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    26   6.6  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.8  

>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +2

Query: 20  NESDAKRNFSERVRNDIMRVLRE 88
           N++DA++N  +R+RND+++ L E
Sbjct: 72  NDNDARKNLRKRLRNDVLKDLAE 94


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 29  DAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGRRIGER 145
           + +++  E    DI ++ RE +E+G +    S R  GER
Sbjct: 62  EKQKSIRETYEKDINKLKRELEELGVEANTASYRNRGER 100


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 84  GKPTKLVPKDKGTPGGELAKE*QTLRFGGTRSLSRWNAWLRPAKS*ATPA 233
           G P K  P+   TP   +      +R GG+R +S  N W + + S   P+
Sbjct: 206 GTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKISASLGFPS 255


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -3

Query: 303 PVIETLLDNVKRPLDAAMARSSCRRVSLSFSQVATKRSISIETSFLQNVVSVILSPILRP 124
           P +   LD   + L      S  +  +L+   +++K S  I TSF +  V  ILSPI + 
Sbjct: 240 PEVSKHLDGFVKILPYDRVFSDAKNSNLTRIGISSKTSWCIATSFGETKVMPILSPISQA 299

Query: 123 ESL 115
           + +
Sbjct: 300 KGI 302


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 385 GTLAARRPLSGGTAPPCRALAPNLVFSPGDRDT 287
           GTL    P +G  AP CR  + +  F PG+ +T
Sbjct: 212 GTLIVWNPATG--APECRMSSDDHRFDPGNEET 242


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 187 LDRDLVPPKRSVCYSFANS 131
           LD D  PPKRS+ +   NS
Sbjct: 75  LDPDAYPPKRSIAFVLLNS 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,427
Number of Sequences: 5004
Number of extensions: 60206
Number of successful extensions: 239
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)