Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0313.Seq
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD...    32   0.36 
At5g29090.1 68418.m03619 hypothetical protein                          29   3.3  
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,...    29   3.3  
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,...    29   3.3  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    28   5.8  
At3g46330.1 68416.m05017 leucine-rich repeat protein kinase, put...    28   5.8  
At3g14990.2 68416.m01896 4-methyl-5(b-hydroxyethyl)-thiazole mon...    28   7.7  
At3g14990.1 68416.m01895 4-methyl-5(b-hydroxyethyl)-thiazole mon...    28   7.7  
At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative s...    28   7.7  
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ...    28   7.7  

>At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD) /
           sigma-like factor (SIG4) identical to RNA polymerase
           sigma subunit SigD [Arabidopsis thaliana] GI:4972296,
           sigma-like factor [Arabidopsis thaliana] GI:3983260;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
          Length = 419

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = +1

Query: 106 PRTKGLRAENWRKNNRHYVLEERGLY--RDGTLGCDLRKAERHPPTAGASHRGIEGPLHI 279
           P   G+++E  RK  R   +    L    +   G +        P  GAS  G    L  
Sbjct: 69  PEKWGIQSEKRRKRRRRRRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEE 128

Query: 280 VQECLYHREKRQGLEQVHDTVEQSLLKEVALLRECQDKFRSMLE 411
           VQ CLY +E  + LE +  +VE++ +  V L      K RS  E
Sbjct: 129 VQLCLYLKEGAK-LENLGTSVEENEMVSVLLASGRGKKKRSANE 171


>At5g29090.1 68418.m03619 hypothetical protein 
          Length = 195

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = +3

Query: 222 ATPADSWSEPSRHRGASSHCPGVSLSPGEKTRFGASARHGGAVPPERGRLAARVPGQV 395
           A+ A +W  P+R  G S     +  S G   R  A   HG A    R RL  RV G V
Sbjct: 129 ASLAKAWHTPARSGGWSGRIGKLWPSDGANQRALAKTWHGWAGFSWRHRLLGRVDGPV 186


>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +2

Query: 266 GLFTLSRSVSITGRKD-KVWSKCTTRWSSPS*KRSPCCESARTSFAACLKRYGSSPRTAA 442
           G  + +RS+   G    K W +  +R        SP C S  +  ++   ++  S R ++
Sbjct: 309 GEVSKTRSLPRNGMASTKFWQETNSRLRRMQDPGSPQCSSPSSRISSISSKFSQSKRFSS 368

Query: 443 RRNTSWRPTCATRSMRSGSTPCSPAQ 520
               +  P   T  +R  + P SP++
Sbjct: 369 DSPLTSSPRGMTSPIRGATRPASPSK 394


>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 627

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +2

Query: 266 GLFTLSRSVSITGRKD-KVWSKCTTRWSSPS*KRSPCCESARTSFAACLKRYGSSPRTAA 442
           G  + +RS+   G    K W +  +R        SP C S  +  ++   ++  S R ++
Sbjct: 309 GEVSKTRSLPRNGMASTKFWQETNSRLRRMQDPGSPQCSSPSSRISSISSKFSQSKRFSS 368

Query: 443 RRNTSWRPTCATRSMRSGSTPCSPAQ 520
               +  P   T  +R  + P SP++
Sbjct: 369 DSPLTSSPRGMTSPIRGATRPASPSK 394


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 389 SWHSRSKATSFRRDCSTVSC-TCSKPCL 309
           S +SR  AT+ R D STVSC TC   C+
Sbjct: 787 SRNSRPTATNPRNDESTVSCNTCGSQCV 814


>At3g46330.1 68416.m05017 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 878

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 521 IELVNMESIPSAYSLLRMSVSSSCCVARQFL 429
           IE+V +++I + Y L R+S     CV +QFL
Sbjct: 367 IEVVAIKNIRTTYGLSRISWQGDPCVPKQFL 397


>At3g14990.2 68416.m01896 4-methyl-5(b-hydroxyethyl)-thiazole
           monophosphate biosynthesis protein, putative supporting
           cDNA gi|11908017|gb|AF326856.1|; contains Pfam profile
           PF01965:DJ-1/PfpI family; identical to cDNA  EST Athsr7
           GI:5281061
          Length = 369

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 188 MERLVATCEKLSDTRRQLERAIAASRG 268
           ME+L ATC    ++R Q++  I  SRG
Sbjct: 109 MEKLAATCATAVESRVQIDGRIVTSRG 135


>At3g14990.1 68416.m01895 4-methyl-5(b-hydroxyethyl)-thiazole
           monophosphate biosynthesis protein, putative supporting
           cDNA gi|11908017|gb|AF326856.1|; contains Pfam profile
           PF01965:DJ-1/PfpI family; identical to cDNA  EST Athsr7
           GI:5281061
          Length = 392

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 188 MERLVATCEKLSDTRRQLERAIAASRG 268
           ME+L ATC    ++R Q++  I  SRG
Sbjct: 132 MEKLAATCATAVESRVQIDGRIVTSRG 158


>At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative
           similar to cytosolic aminopeptidase P from [Homo
           sapiens] GI:8489879, [Rattus norvegicus] GI:2760920;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 569

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 240 WSEPSRHRGASSHCPGVSLSPGEKTRFGASARHGGAVPPERGRLAARVPGQVSQHA 407
           W     +R  + H  G +L+  E  +   S R+G   P + G + +  PG    HA
Sbjct: 427 WKIGLDYRHGTGHGVGAALNVHEGPQ-SISFRYGNMTPLQNGMIVSNEPGYYEDHA 481


>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 538

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 443 RRNTSWRPTCATRSMRSGSTPCSP 514
           R N  W P C  RS ++ + PC P
Sbjct: 42  RCNIKWHPYCVPRSTKNINHPCHP 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,705
Number of Sequences: 28952
Number of extensions: 348241
Number of successful extensions: 1301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)