Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0312.Seq
         (744 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ323994-1|ABC88596.1|  150|Homo sapiens SFPQ protein.                 33   1.4  
AK123582-1|BAC85651.1|  165|Homo sapiens  mRNA.  protein.              33   1.4  
AK095331-1|BAC04532.1|  151|Homo sapiens protein ( Homo sapiens ...    33   1.4  
BC024009-1|AAH24009.3|  725|Homo sapiens leucine rich repeat con...    32   2.5  
AK058059-1|BAB71645.1|  524|Homo sapiens protein ( Homo sapiens ...    32   2.5  

>DQ323994-1|ABC88596.1|  150|Homo sapiens SFPQ protein.
          Length = 150

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -2

Query: 566 VWPPSDVSLTPSG-----IAQTM*RCRCTVGSQPGTQYRPWPGP 450
           VWPPS  S  P G     + ++  R    +G +PG +  PWP P
Sbjct: 63  VWPPSCYSQCPQGRPPHPVPRSPRRGSRDLGKEPGEEAAPWPSP 106


>AK123582-1|BAC85651.1|  165|Homo sapiens  mRNA.  protein.
          Length = 165

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -2

Query: 566 VWPPSDVSLTPSG-----IAQTM*RCRCTVGSQPGTQYRPWPGP 450
           VWPPS  S  P G     + ++  R    +G +PG +  PWP P
Sbjct: 77  VWPPSCYSQCPQGRPPHPVPRSPRRGSRDLGKEPGEEAAPWPSP 120


>AK095331-1|BAC04532.1|  151|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38012 fis, clone CTONG2012554. ).
          Length = 151

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -2

Query: 566 VWPPSDVSLTPSG-----IAQTM*RCRCTVGSQPGTQYRPWPGP 450
           VWPPS  S  P G     + ++  R    +G +PG +  PWP P
Sbjct: 63  VWPPSCYSQCPQGRPPHPVPRSPRRGSRDLGKEPGEEAAPWPSP 106


>BC024009-1|AAH24009.3|  725|Homo sapiens leucine rich repeat
           containing 50 protein.
          Length = 725

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 257 VPAKNPHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFED 388
           +PA+ P  PPPV VK      +    L A  LL  PP +V  ED
Sbjct: 442 LPAEAPPPPPPVEVKGEDGDQEPEGTLPAETLLLSPPVKVKGED 485


>AK058059-1|BAB71645.1|  524|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25330 fis, clone TST00576. ).
          Length = 524

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 257 VPAKNPHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFED 388
           +PA+ P  PPPV VK      +    L A  LL  PP +V  ED
Sbjct: 241 LPAEAPPPPPPVEVKGEDGDQEPEGTLPAETLLLSPPVKVKGED 284


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,808,867
Number of Sequences: 237096
Number of extensions: 2350303
Number of successful extensions: 8524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8521
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)