Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0312.Seq
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54530.1 68416.m06034 hypothetical protein                          29   3.3  
At5g37950.1 68418.m04571 hypothetical protein                          29   4.3  
At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 / ad...    27   9.9  

>At3g54530.1 68416.m06034 hypothetical protein 
          Length = 273

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 594 TTIGRALDNPFXEMENVVWEQRVHFASCPSLGFV*XIRAL 713
           T + R L+    E+EN++ + R+HFA     G++  IR L
Sbjct: 184 TNVHRELEKEKIELENIL-QDRIHFARKNEKGYIEKIRVL 222


>At5g37950.1 68418.m04571 hypothetical protein
          Length = 351

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 272 PHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRY 439
           P + P   +KT GP+W I ++ K   +  K         +QE   +  VIYD F Y
Sbjct: 40  PESLPASDLKTLGPIWFIIKLNKECEISFKKCLGQFLLQQQEE--IACVIYDEFMY 93


>At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 /
           adenylate dimethylallyltransferase / cytokinin synthase
           (IPT6) identical to adenylate isopentenyltransferase
           (IPT6) [Arabidopsis thaliana] GI:14279064
          Length = 342

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 706 LIXYTNPSDGQLAKCTLCSQTTFSISXNGLSSALPIVV 593
           L+   +P DG+L      S  T SIS    S  LPIVV
Sbjct: 105 LLGQFHPQDGELTPAEFRSLATLSISKLISSKKLPIVV 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,499,138
Number of Sequences: 28952
Number of extensions: 319214
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)